Variant report

Variant	rs55635944
Chromosome Location	chr6:164499629-164499630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164499576..164502475-chr6:164505430..164508484,3	K562	blood:
2	chr6:164499576..164501564-chr6:164505270..164508227,3	K562	blood:

Variant related genes	Relation type
ENSG00000260422	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1436852	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896005	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896013	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205999	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206706	1.00[ASN][1000 genomes]
rs206736	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206743	1.00[ASN][1000 genomes]
rs364690	0.92[EUR][1000 genomes]
rs365554	0.92[EUR][1000 genomes]
rs366057	0.92[EUR][1000 genomes]
rs368098	0.92[EUR][1000 genomes]
rs368285	0.92[EUR][1000 genomes]
rs372947	0.92[EUR][1000 genomes]
rs384602	0.92[EUR][1000 genomes]
rs392065	0.89[EUR][1000 genomes]
rs393056	0.92[EUR][1000 genomes]
rs393189	0.92[EUR][1000 genomes]
rs393937	0.92[EUR][1000 genomes]
rs394700	0.92[EUR][1000 genomes]
rs396287	0.92[EUR][1000 genomes]
rs401619	0.92[EUR][1000 genomes]
rs402205	0.92[EUR][1000 genomes]
rs409221	0.92[EUR][1000 genomes]
rs416506	0.92[EUR][1000 genomes]
rs417441	0.92[EUR][1000 genomes]
rs420852	0.92[EUR][1000 genomes]
rs421102	0.92[EUR][1000 genomes]
rs421311	0.92[EUR][1000 genomes]
rs430842	0.92[EUR][1000 genomes]
rs432051	0.92[EUR][1000 genomes]
rs440055	0.92[EUR][1000 genomes]
rs441521	0.92[EUR][1000 genomes]
rs444411	0.92[EUR][1000 genomes]
rs445206	0.92[EUR][1000 genomes]
rs447413	0.89[EUR][1000 genomes]
rs447823	0.87[EUR][1000 genomes]
rs450552	0.92[EUR][1000 genomes]
rs450677	0.92[EUR][1000 genomes]
rs452936	0.92[EUR][1000 genomes]
rs453274	0.92[EUR][1000 genomes]
rs453909	0.92[EUR][1000 genomes]
rs4620091	0.92[EUR][1000 genomes]
rs55827712	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947109	1.00[ASN][1000 genomes]
rs56076452	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153379	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58500753	0.89[EUR][1000 genomes]
rs60840152	1.00[ASN][1000 genomes]
rs688989	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164484800-164502800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:164492600-164504800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164497200-164500200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:164499000-164499800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:164499000-164500000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:164499000-164500000	Enhancers	Brain Substantia Nigra	brain
7	chr6:164499000-164500000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:164499000-164500200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:164499200-164500000	Enhancers	Brain Anterior Caudate	brain
10	chr6:164499200-164500200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:164499200-164500200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:164499200-164500400	Enhancers	Right Atrium	heart
13	chr6:164499200-164505200	Weak transcription	Right Ventricle	heart
14	chr6:164499400-164499800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:164499400-164499800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:164499400-164500000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:164499400-164500200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:164499400-164500200	Enhancers	Adipose Nuclei	Adipose
19	chr6:164499400-164500400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:164499400-164503800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:164499400-164505400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:164499600-164500200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:164499600-164500400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:164499600-164501600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:164499600-164506000	Weak transcription	HSMMtube	muscle

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