Variant report

Variant	rs60840152
Chromosome Location	chr6:164510370-164510371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164495742..164498134-chr6:164508820..164511550,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1436852	1.00[ASN][1000 genomes]
rs16896005	1.00[ASN][1000 genomes]
rs16896013	1.00[ASN][1000 genomes]
rs172272	0.85[EUR][1000 genomes]
rs205999	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs206706	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206736	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206743	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364690	0.81[AMR][1000 genomes]
rs365554	0.81[AMR][1000 genomes]
rs366057	0.81[AMR][1000 genomes]
rs368098	0.81[AMR][1000 genomes]
rs368285	0.81[AMR][1000 genomes]
rs372947	0.81[AMR][1000 genomes]
rs384602	0.81[AMR][1000 genomes]
rs392065	0.81[AMR][1000 genomes]
rs393056	0.81[AMR][1000 genomes]
rs393189	0.81[AMR][1000 genomes]
rs393937	0.81[AMR][1000 genomes]
rs394700	0.81[AMR][1000 genomes]
rs396287	0.81[AMR][1000 genomes]
rs401619	0.81[AMR][1000 genomes]
rs409221	0.81[AMR][1000 genomes]
rs416506	0.81[AMR][1000 genomes]
rs417441	0.81[AMR][1000 genomes]
rs420852	0.81[AMR][1000 genomes]
rs421102	0.81[AMR][1000 genomes]
rs421311	0.81[AMR][1000 genomes]
rs430842	0.81[AMR][1000 genomes]
rs432051	0.81[AMR][1000 genomes]
rs440055	0.81[AMR][1000 genomes]
rs441521	0.81[AMR][1000 genomes]
rs444411	0.81[AMR][1000 genomes]
rs445206	0.81[AMR][1000 genomes]
rs447413	0.81[AMR][1000 genomes]
rs447823	0.81[AMR][1000 genomes]
rs450552	0.81[AMR][1000 genomes]
rs450677	0.81[AMR][1000 genomes]
rs452936	0.81[AMR][1000 genomes]
rs453909	0.81[AMR][1000 genomes]
rs4620091	0.81[AMR][1000 genomes]
rs55635944	1.00[ASN][1000 genomes]
rs55827712	1.00[ASN][1000 genomes]
rs55947109	1.00[ASN][1000 genomes]
rs56076452	1.00[ASN][1000 genomes]
rs56153379	1.00[ASN][1000 genomes]
rs688989	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164506400-164530200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164507000-164519200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:164507800-164518000	Weak transcription	Right Ventricle	heart
4	chr6:164509800-164510800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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