Variant report

Variant	rs2070527
Chromosome Location	chr21:40067495-40067496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1003763	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1015070	0.84[MEX][hapmap]
rs1540016	0.85[MEX][hapmap]
rs1893202	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2009690	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2226685	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2246005	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2836613	0.81[EUR][1000 genomes]
rs2836619	0.83[EUR][1000 genomes]
rs2836620	0.93[EUR][1000 genomes]
rs2836638	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs461592	0.85[MEX][hapmap]
rs463269	0.85[MEX][hapmap]
rs463501	0.90[MEX][hapmap]
rs6517476	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6517477	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs762384	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2070527	PIGP	cis	parietal	SCAN
rs2070527	SETD4	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40060000-40073200	Weak transcription	Aorta	Aorta
3	chr21:40067200-40067600	Enhancers	Fetal Brain Male	brain
4	chr21:40067400-40067800	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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