Variant report

Variant	rs2836619
Chromosome Location	chr21:40051447-40051448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40049094..40052988-chr21:40053100..40057080,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1003763	0.84[EUR][1000 genomes]
rs1015069	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1015070	0.91[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1540015	0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1540016	0.91[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1893202	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2009690	0.84[EUR][1000 genomes]
rs2070527	0.83[EUR][1000 genomes]
rs2226685	0.85[EUR][1000 genomes]
rs2246005	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2836613	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836620	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2836638	0.85[EUR][1000 genomes]
rs458783	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs459813	0.88[EUR][1000 genomes]
rs460112	0.91[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs460843	0.82[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs460947	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs461488	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs461592	0.91[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs463269	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs463501	0.91[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs463530	0.87[CEU][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs465004	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs465327	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62217514	0.83[EUR][1000 genomes]
rs6517476	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6517477	0.86[EUR][1000 genomes]
rs762384	0.85[EUR][1000 genomes]
rs8132920	0.87[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8134664	0.91[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9647180	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs994003	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9975531	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40049800-40053000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr21:40050800-40052400	Enhancers	HSMM	muscle
4	chr21:40051000-40051600	Flanking Active TSS	NH-A	brain
5	chr21:40051000-40051800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr21:40051000-40052000	Enhancers	HMEC	breast
7	chr21:40051000-40052400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr21:40051000-40052400	Enhancers	Right Atrium	heart
9	chr21:40051000-40052600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr21:40051000-40052600	Enhancers	Spleen	Spleen
11	chr21:40051000-40052800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr21:40051000-40052800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr21:40051000-40052800	Enhancers	HUVEC	blood vessel
14	chr21:40051000-40052800	Enhancers	NHDF-Ad	bronchial
15	chr21:40051000-40052800	Enhancers	NHLF	lung
16	chr21:40051000-40053000	Enhancers	Hela-S3	cervix
17	chr21:40051200-40051600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr21:40051200-40051800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr21:40051200-40051800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr21:40051200-40051800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr21:40051200-40051800	Enhancers	GM12878-XiMat	blood
22	chr21:40051200-40051800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
23	chr21:40051200-40052000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr21:40051200-40052000	Flanking Active TSS	Osteobl	bone
25	chr21:40051200-40052400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr21:40051200-40052400	Enhancers	Adipose Nuclei	Adipose
27	chr21:40051200-40052600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr21:40051400-40051600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr21:40051400-40051600	Enhancers	Aorta	Aorta
30	chr21:40051400-40051600	Enhancers	A549	lung
31	chr21:40051400-40051800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr21:40051400-40051800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr21:40051400-40051800	Enhancers	Brain Hippocampus Middle	brain
34	chr21:40051400-40051800	Enhancers	Left Ventricle	heart
35	chr21:40051400-40052400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links