Variant report

Variant	rs2836620
Chromosome Location	chr21:40053079-40053080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1003763	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1015069	0.91[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1015070	0.91[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1540015	0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1540016	0.91[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1893202	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2009690	0.93[EUR][1000 genomes]
rs2070527	0.93[EUR][1000 genomes]
rs2226685	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2246005	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2836613	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836619	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2836638	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs458465	0.84[JPT][hapmap]
rs458783	0.82[ASN][1000 genomes]
rs459813	0.80[EUR][1000 genomes]
rs460112	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs460843	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs460947	0.85[ASN][1000 genomes]
rs461488	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs461592	0.91[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs463269	0.86[CEU][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs463501	0.91[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[ASN][1000 genomes]
rs463530	0.86[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs465004	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs465327	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6517476	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6517477	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs762384	0.93[EUR][1000 genomes]
rs8132920	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8134664	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9647180	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs994003	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9975531	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2836620	SETD4	cis	parietal	SCAN
rs2836620	RUNX1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40040000-40071200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:40052000-40054200	Enhancers	Aorta	Aorta
3	chr21:40053000-40053600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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