Variant report

Variant	rs2121052
Chromosome Location	chr1:66988477-66988478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12024358	0.83[ASN][1000 genomes]
rs12135213	0.83[ASN][1000 genomes]
rs12749728	0.83[ASN][1000 genomes]
rs12756331	0.81[EUR][1000 genomes]
rs1338195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338205	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415977	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486972	0.85[YRI][hapmap]
rs2121053	0.83[ASN][1000 genomes]
rs2121054	0.83[ASN][1000 genomes]
rs2197475	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2312150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652756	0.82[ASN][1000 genomes]
rs4655615	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547570	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518465	chr1:66986377-66988586	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66986200-66989400	Weak transcription	HepG2	liver
2	chr1:66987000-66990400	Enhancers	Hela-S3	cervix
3	chr1:66987200-66990200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:66987800-66989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:66987800-66989200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:66987800-66989200	Weak transcription	NH-A	brain
7	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
8	chr1:66988000-66989000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:66988000-66990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:66988200-66989200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:66988200-66989400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:66988200-66989400	Weak transcription	NHLF	lung
14	chr1:66988200-66993000	Weak transcription	NHDF-Ad	bronchial
15	chr1:66988400-66991600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:66988400-66998200	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links