Variant report

Variant	rs4655615
Chromosome Location	chr1:66986275-66986276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12024358	0.83[ASN][1000 genomes]
rs12135213	0.83[ASN][1000 genomes]
rs12749728	0.83[ASN][1000 genomes]
rs12756331	0.81[EUR][1000 genomes]
rs1338195	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338205	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415977	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121052	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121053	0.83[ASN][1000 genomes]
rs2121054	0.83[ASN][1000 genomes]
rs2197475	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2312150	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652756	0.82[ASN][1000 genomes]
rs7547570	0.83[CHB][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66983600-66987200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:66985800-66988000	Enhancers	A549	lung
3	chr1:66986000-66987000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:66986000-66987200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:66986000-66987200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:66986200-66986400	Enhancers	Osteobl	bone
7	chr1:66986200-66989400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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