Variant report

Variant	rs2124243
Chromosome Location	chr6:130892869-130892870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10005541	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10025923	0.92[EUR][1000 genomes]
rs11935485	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11936119	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11941744	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1455302	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28780400	1.00[ASN][1000 genomes]
rs34421130	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4296696	0.92[EUR][1000 genomes]
rs4380548	0.88[EUR][1000 genomes]
rs4406043	0.92[EUR][1000 genomes]
rs4583784	0.92[EUR][1000 genomes]
rs4588482	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56723253	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58453514	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58870974	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60896670	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62308755	0.89[EUR][1000 genomes]
rs62308756	0.88[EUR][1000 genomes]
rs62308757	0.88[EUR][1000 genomes]
rs62308758	0.86[EUR][1000 genomes]
rs72662682	0.87[EUR][1000 genomes]
rs7661185	0.90[EUR][1000 genomes]
rs7666610	0.87[EUR][1000 genomes]
rs7684699	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7693420	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5475	chr6:130880169-130924850	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130882600-130894400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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