Variant report
| Variant | rs58453514 |
|---|---|
| Chromosome Location | chr4:80022148-80022149 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10005541 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10025923 | 0.98[EUR][1000 genomes] |
| rs11935485 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11936119 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11941744 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1455302 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2124243 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34421130 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4296696 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4380548 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4406043 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4583784 | 0.98[EUR][1000 genomes] |
| rs4588482 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs56723253 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58870974 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60896670 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62308755 | 0.99[EUR][1000 genomes] |
| rs62308756 | 0.98[EUR][1000 genomes] |
| rs62308757 | 0.98[EUR][1000 genomes] |
| rs62308758 | 0.96[EUR][1000 genomes] |
| rs72662682 | 0.97[EUR][1000 genomes] |
| rs7661185 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7666610 | 0.97[EUR][1000 genomes] |
| rs7684699 | 0.91[EUR][1000 genomes] |
| rs7693420 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000907 | chr4:79838948-80224764 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv879505 | chr4:79887043-80293046 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3448470 | chr4:79898340-80026510 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:80016400-80022200 | Weak transcription | Primary hematopoietic stem cells | blood |
| 2 | chr4:80021000-80031400 | Weak transcription | Aorta | Aorta |
