Variant report

Variant	rs7661185
Chromosome Location	chr4:80025118-80025119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10005541	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10025923	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11935485	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11936119	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941744	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1455302	0.95[EUR][1000 genomes]
rs2124243	0.90[EUR][1000 genomes]
rs34421130	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4296696	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4380548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4406043	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4583784	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4588482	0.98[EUR][1000 genomes]
rs56723253	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58453514	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58870974	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896670	0.97[EUR][1000 genomes]
rs62308755	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62308756	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62308757	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62308758	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72662682	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7666610	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7684699	0.91[EUR][1000 genomes]
rs7693420	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3448470	chr4:79898340-80026510	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7661185	SCARB2	cis	parietal	SCAN
rs7661185	G3BP2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80021000-80031400	Weak transcription	Aorta	Aorta

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