Variant report

Variant	rs4588482
Chromosome Location	chr4:80033504-80033505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10005541	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025923	1.00[EUR][1000 genomes]
rs11935485	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936119	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11941744	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1455302	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2124243	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34421130	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4296696	1.00[EUR][1000 genomes]
rs4380548	0.96[EUR][1000 genomes]
rs4406043	1.00[EUR][1000 genomes]
rs4583784	1.00[EUR][1000 genomes]
rs56723253	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58453514	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58870974	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60896670	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62308755	0.97[EUR][1000 genomes]
rs62308756	0.96[EUR][1000 genomes]
rs62308757	0.96[EUR][1000 genomes]
rs62308758	0.94[EUR][1000 genomes]
rs72662682	0.95[EUR][1000 genomes]
rs7661185	0.98[EUR][1000 genomes]
rs7666610	0.95[EUR][1000 genomes]
rs7684699	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7693420	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs930834	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4588482	G3BP2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80031800-80033600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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