Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10005541	0.89[EUR][1000 genomes]
rs10025923	0.89[EUR][1000 genomes]
rs11935485	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11936119	0.91[EUR][1000 genomes]
rs11941744	0.89[EUR][1000 genomes]
rs1378376	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1455302	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2124243	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34421130	0.91[EUR][1000 genomes]
rs4296696	0.89[EUR][1000 genomes]
rs4380548	0.84[EUR][1000 genomes]
rs4406043	0.89[EUR][1000 genomes]
rs4583784	0.89[EUR][1000 genomes]
rs4588482	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56723253	0.91[EUR][1000 genomes]
rs58453514	0.91[EUR][1000 genomes]
rs58870974	0.91[EUR][1000 genomes]
rs60896670	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62308755	0.92[EUR][1000 genomes]
rs62308756	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62308757	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62308758	0.86[EUR][1000 genomes]
rs72662682	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7661185	0.91[EUR][1000 genomes]
rs7666610	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7693420	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3448470	chr4:79898340-80026510	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80007200-80012400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:80010000-80011800	Enhancers	Fetal Heart	heart
3	chr4:80010400-80012400	Enhancers	Fetal Kidney	kidney
4	chr4:80011200-80011800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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