Variant report

Variant	rs2149115
Chromosome Location	chr1:63215374-63215375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10493327	0.81[ASN][1000 genomes]
rs10736399	0.80[ASN][1000 genomes]
rs10749734	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10789124	0.87[ASN][1000 genomes]
rs10789125	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10889365	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10889366	0.92[ASN][1000 genomes]
rs10889371	0.85[ASN][1000 genomes]
rs10889372	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10889374	0.85[ASN][1000 genomes]
rs10889375	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10889376	0.86[ASN][1000 genomes]
rs11208013	0.92[ASN][1000 genomes]
rs11208019	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11208021	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11208023	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11208024	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11208025	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11208026	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11208027	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11208032	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11208035	0.83[ASN][1000 genomes]
rs11208037	0.82[ASN][1000 genomes]
rs11208038	0.82[ASN][1000 genomes]
rs11208040	0.81[ASN][1000 genomes]
rs11208045	0.81[ASN][1000 genomes]
rs11208046	0.81[ASN][1000 genomes]
rs11579171	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11579518	0.83[ASN][1000 genomes]
rs11807368	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12085904	0.85[ASN][1000 genomes]
rs12120847	0.82[ASN][1000 genomes]
rs12129919	0.87[ASN][1000 genomes]
rs12134455	0.82[ASN][1000 genomes]
rs12138091	0.86[ASN][1000 genomes]
rs12567340	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12567999	0.81[ASN][1000 genomes]
rs12752360	0.83[ASN][1000 genomes]
rs2366820	0.82[ASN][1000 genomes]
rs2366821	0.81[ASN][1000 genomes]
rs2886771	0.81[ASN][1000 genomes]
rs3737893	0.81[ASN][1000 genomes]
rs4396149	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6587990	0.83[ASN][1000 genomes]
rs6587991	0.82[ASN][1000 genomes]
rs6656747	0.86[ASN][1000 genomes]
rs6657707	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6660873	0.83[ASN][1000 genomes]
rs6664372	0.85[ASN][1000 genomes]
rs6664677	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6686232	0.83[ASN][1000 genomes]
rs6695607	0.81[ASN][1000 genomes]
rs6702274	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7512374	0.81[ASN][1000 genomes]
rs7512529	0.81[ASN][1000 genomes]
rs7517722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524508	0.81[ASN][1000 genomes]
rs7540030	0.85[ASN][1000 genomes]
rs7543380	0.85[ASN][1000 genomes]
rs7546804	0.92[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63208800-63220400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:63210800-63215400	Weak transcription	Liver	Liver
3	chr1:63211000-63222200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:63212200-63217000	Weak transcription	Fetal Stomach	stomach
5	chr1:63212400-63215600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:63212400-63216400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:63212400-63216600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:63212400-63216800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:63212400-63218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links