Variant report

Variant	rs10889372
Chromosome Location	chr1:63227380-63227381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63226481..63229254-chr1:63247803..63249813,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125703	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10493327	0.87[ASN][1000 genomes]
rs10736399	0.86[ASN][1000 genomes]
rs10749734	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10789124	0.90[ASN][1000 genomes]
rs10789125	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10789129	0.82[ASN][1000 genomes]
rs10889365	0.86[EUR][1000 genomes]
rs10889366	0.86[ASN][1000 genomes]
rs10889371	0.91[ASN][1000 genomes]
rs10889374	0.91[ASN][1000 genomes]
rs10889375	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10889376	0.92[ASN][1000 genomes]
rs10889385	0.82[ASN][1000 genomes]
rs10889386	0.80[ASN][1000 genomes]
rs11208013	0.86[ASN][1000 genomes]
rs11208019	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11208021	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11208023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208024	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11208026	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11208027	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11208032	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11208035	0.90[ASN][1000 genomes]
rs11208037	0.89[ASN][1000 genomes]
rs11208038	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11208040	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11208043	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11208045	0.87[ASN][1000 genomes]
rs11208046	0.87[ASN][1000 genomes]
rs11208050	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11579171	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11579518	0.90[ASN][1000 genomes]
rs11584363	0.82[ASN][1000 genomes]
rs11587081	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11803404	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11807368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12085904	0.91[ASN][1000 genomes]
rs12120847	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12128286	0.81[ASN][1000 genomes]
rs12129919	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12134455	0.89[ASN][1000 genomes]
rs12138091	0.92[ASN][1000 genomes]
rs12567340	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12567999	0.87[ASN][1000 genomes]
rs12725996	0.80[AMR][1000 genomes]
rs12743698	0.85[ASN][1000 genomes]
rs12748640	0.85[ASN][1000 genomes]
rs12752360	0.90[ASN][1000 genomes]
rs1333736	0.83[ASN][1000 genomes]
rs1360678	0.83[ASN][1000 genomes]
rs17097064	0.81[ASN][1000 genomes]
rs1981067	0.81[ASN][1000 genomes]
rs2149115	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2366820	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2366821	0.88[ASN][1000 genomes]
rs2886770	0.80[ASN][1000 genomes]
rs2886771	0.87[ASN][1000 genomes]
rs3737892	0.85[ASN][1000 genomes]
rs3737893	0.87[ASN][1000 genomes]
rs4396149	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4448545	0.86[ASN][1000 genomes]
rs6587990	0.90[ASN][1000 genomes]
rs6587991	0.89[ASN][1000 genomes]
rs6587992	0.85[ASN][1000 genomes]
rs6587993	0.85[ASN][1000 genomes]
rs6587994	0.85[ASN][1000 genomes]
rs6587996	0.81[ASN][1000 genomes]
rs6656119	0.81[ASN][1000 genomes]
rs6656747	0.92[ASN][1000 genomes]
rs6657707	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6660873	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6664372	0.91[ASN][1000 genomes]
rs6664673	0.82[ASN][1000 genomes]
rs6664677	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665455	0.80[ASN][1000 genomes]
rs6665932	0.85[ASN][1000 genomes]
rs6670072	0.83[ASN][1000 genomes]
rs6670694	0.83[ASN][1000 genomes]
rs6676637	0.82[ASN][1000 genomes]
rs6676821	0.83[ASN][1000 genomes]
rs6677051	0.83[ASN][1000 genomes]
rs6682286	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6683423	0.80[ASN][1000 genomes]
rs6683732	0.83[ASN][1000 genomes]
rs6683832	0.83[ASN][1000 genomes]
rs6686232	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6695607	0.87[ASN][1000 genomes]
rs6702274	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7414021	0.82[ASN][1000 genomes]
rs7512374	0.87[ASN][1000 genomes]
rs7512529	0.87[ASN][1000 genomes]
rs7517722	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7519205	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7521483	0.81[ASN][1000 genomes]
rs7524508	0.87[ASN][1000 genomes]
rs7527423	0.81[ASN][1000 genomes]
rs7527905	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7540030	0.90[ASN][1000 genomes]
rs7540205	0.83[ASN][1000 genomes]
rs7543380	0.91[ASN][1000 genomes]
rs7546804	0.86[ASN][1000 genomes]
rs7553110	0.82[ASN][1000 genomes]
rs7555606	0.82[ASN][1000 genomes]
rs998096	0.81[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63225800-63227400	Enhancers	Esophagus	oesophagus
2	chr1:63225800-63231400	Weak transcription	Right Atrium	heart
3	chr1:63226400-63228800	Enhancers	Placenta	Placenta
4	chr1:63226600-63227800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr1:63226600-63227800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:63226600-63228200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr1:63226600-63228600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:63226800-63228000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:63227000-63227600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:63227000-63231600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:63227200-63231400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:63227200-63231600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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