Variant report

Variant	rs2151460
Chromosome Location	chr20:24836016-24836017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1109682	0.82[EUR][1000 genomes]
rs11908480	0.82[EUR][1000 genomes]
rs1467769	0.84[EUR][1000 genomes]
rs34799975	1.00[EUR][1000 genomes]
rs6036921	0.84[EUR][1000 genomes]
rs6036927	0.84[EUR][1000 genomes]
rs6036932	1.00[EUR][1000 genomes]
rs6036938	1.00[EUR][1000 genomes]
rs6036944	1.00[EUR][1000 genomes]
rs6050001	0.84[EUR][1000 genomes]
rs6050003	0.84[EUR][1000 genomes]
rs6050005	0.84[EUR][1000 genomes]
rs6050006	0.84[EUR][1000 genomes]
rs6050013	0.84[EUR][1000 genomes]
rs6050014	0.84[EUR][1000 genomes]
rs6050016	0.92[EUR][1000 genomes]
rs6050017	0.84[EUR][1000 genomes]
rs6050019	0.84[EUR][1000 genomes]
rs6050023	0.84[EUR][1000 genomes]
rs6050041	1.00[EUR][1000 genomes]
rs6050042	1.00[EUR][1000 genomes]
rs6050045	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6050047	1.00[EUR][1000 genomes]
rs6050049	1.00[EUR][1000 genomes]
rs6050257	1.00[CEU][hapmap]
rs6106922	1.00[GIH][hapmap]
rs6106952	0.82[EUR][1000 genomes]
rs6114818	1.00[GIH][hapmap]
rs6114875	0.92[EUR][1000 genomes]
rs6114886	0.84[EUR][1000 genomes]
rs6114888	0.84[EUR][1000 genomes]
rs7262621	0.82[EUR][1000 genomes]
rs7262640	0.82[EUR][1000 genomes]
rs73335473	0.84[EUR][1000 genomes]
rs73335492	0.84[EUR][1000 genomes]
rs73337274	0.84[EUR][1000 genomes]
rs73339206	0.92[EUR][1000 genomes]
rs73903961	0.82[EUR][1000 genomes]
rs73903963	0.82[EUR][1000 genomes]
rs73903968	0.82[EUR][1000 genomes]
rs8119131	0.84[EUR][1000 genomes]
rs914306	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24834600-24837200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links