Variant report
| Variant | rs6050045 |
|---|---|
| Chromosome Location | chr20:24835734-24835735 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:218)
| rs_ID | r2[population] |
|---|---|
| rs1045772 | 1.00[ASN][1000 genomes] |
| rs11087490 | 1.00[ASN][1000 genomes] |
| rs11087492 | 1.00[ASN][1000 genomes] |
| rs1109682 | 0.82[EUR][1000 genomes] |
| rs1113871 | 1.00[ASN][1000 genomes] |
| rs11696281 | 1.00[ASN][1000 genomes] |
| rs11697253 | 1.00[ASN][1000 genomes] |
| rs11697953 | 1.00[ASN][1000 genomes] |
| rs11697965 | 1.00[ASN][1000 genomes] |
| rs11698426 | 1.00[ASN][1000 genomes] |
| rs11698613 | 1.00[ASN][1000 genomes] |
| rs11699487 | 1.00[ASN][1000 genomes] |
| rs11908480 | 0.82[EUR][1000 genomes] |
| rs12329446 | 1.00[ASN][1000 genomes] |
| rs12329447 | 1.00[ASN][1000 genomes] |
| rs12480836 | 1.00[ASN][1000 genomes] |
| rs1467769 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1555157 | 1.00[ASN][1000 genomes] |
| rs1555158 | 1.00[ASN][1000 genomes] |
| rs1576649 | 1.00[ASN][1000 genomes] |
| rs2151460 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2387573 | 1.00[ASN][1000 genomes] |
| rs28758726 | 1.00[ASN][1000 genomes] |
| rs2892278 | 1.00[ASN][1000 genomes] |
| rs34799975 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4356723 | 1.00[ASN][1000 genomes] |
| rs45501494 | 1.00[ASN][1000 genomes] |
| rs55821861 | 1.00[ASN][1000 genomes] |
| rs55849863 | 1.00[ASN][1000 genomes] |
| rs55875217 | 1.00[ASN][1000 genomes] |
| rs55908555 | 1.00[ASN][1000 genomes] |
| rs55917150 | 1.00[ASN][1000 genomes] |
| rs55940806 | 1.00[ASN][1000 genomes] |
| rs55949243 | 1.00[ASN][1000 genomes] |
| rs56033853 | 1.00[ASN][1000 genomes] |
| rs56110984 | 1.00[ASN][1000 genomes] |
| rs56111326 | 1.00[ASN][1000 genomes] |
| rs56189258 | 1.00[ASN][1000 genomes] |
| rs56222810 | 1.00[ASN][1000 genomes] |
| rs56258611 | 1.00[ASN][1000 genomes] |
| rs56311685 | 1.00[ASN][1000 genomes] |
| rs56313512 | 1.00[ASN][1000 genomes] |
| rs56332860 | 1.00[ASN][1000 genomes] |
| rs57913893 | 1.00[ASN][1000 genomes] |
| rs58751902 | 1.00[ASN][1000 genomes] |
| rs59744473 | 1.00[ASN][1000 genomes] |
| rs6036921 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036927 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036928 | 1.00[ASN][1000 genomes] |
| rs6036932 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036938 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036944 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036949 | 1.00[ASN][1000 genomes] |
| rs6036980 | 1.00[ASN][1000 genomes] |
| rs6036985 | 1.00[ASN][1000 genomes] |
| rs6036986 | 1.00[ASN][1000 genomes] |
| rs6036988 | 1.00[ASN][1000 genomes] |
| rs6036989 | 1.00[ASN][1000 genomes] |
| rs6036990 | 1.00[ASN][1000 genomes] |
| rs6036991 | 1.00[ASN][1000 genomes] |
| rs6036992 | 1.00[ASN][1000 genomes] |
| rs6036993 | 1.00[ASN][1000 genomes] |
| rs6036994 | 1.00[ASN][1000 genomes] |
| rs6036997 | 1.00[ASN][1000 genomes] |
| rs6036999 | 1.00[ASN][1000 genomes] |
| rs6037000 | 1.00[ASN][1000 genomes] |
| rs6037001 | 1.00[ASN][1000 genomes] |
| rs6037002 | 1.00[ASN][1000 genomes] |
| rs6037007 | 1.00[ASN][1000 genomes] |
| rs6050001 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050003 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050005 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050006 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050013 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050014 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050016 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050017 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050019 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050023 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050041 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050042 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050047 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050049 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6050061 | 1.00[ASN][1000 genomes] |
| rs6050075 | 1.00[ASN][1000 genomes] |
| rs6050107 | 1.00[ASN][1000 genomes] |
| rs6050126 | 1.00[ASN][1000 genomes] |
| rs6050130 | 1.00[ASN][1000 genomes] |
| rs6050143 | 1.00[ASN][1000 genomes] |
| rs6050151 | 1.00[ASN][1000 genomes] |
| rs6050152 | 1.00[ASN][1000 genomes] |
| rs6050160 | 1.00[ASN][1000 genomes] |
| rs6050161 | 1.00[ASN][1000 genomes] |
| rs6050162 | 1.00[ASN][1000 genomes] |
| rs6050163 | 1.00[ASN][1000 genomes] |
| rs6050164 | 1.00[ASN][1000 genomes] |
| rs6050166 | 1.00[ASN][1000 genomes] |
| rs6050167 | 1.00[ASN][1000 genomes] |
| rs6050168 | 1.00[ASN][1000 genomes] |
| rs6050169 | 1.00[ASN][1000 genomes] |
| rs6050171 | 1.00[ASN][1000 genomes] |
| rs6050176 | 1.00[ASN][1000 genomes] |
| rs6050180 | 1.00[ASN][1000 genomes] |
| rs6050183 | 1.00[ASN][1000 genomes] |
| rs6050184 | 1.00[ASN][1000 genomes] |
| rs6050185 | 1.00[ASN][1000 genomes] |
| rs6050186 | 1.00[ASN][1000 genomes] |
| rs6050187 | 1.00[ASN][1000 genomes] |
| rs6050189 | 1.00[ASN][1000 genomes] |
| rs6050191 | 1.00[ASN][1000 genomes] |
| rs6050193 | 1.00[ASN][1000 genomes] |
| rs6050197 | 1.00[ASN][1000 genomes] |
| rs6050202 | 1.00[ASN][1000 genomes] |
| rs6050203 | 1.00[ASN][1000 genomes] |
| rs6050204 | 1.00[ASN][1000 genomes] |
| rs6050205 | 1.00[ASN][1000 genomes] |
| rs6050208 | 1.00[ASN][1000 genomes] |
| rs6050209 | 1.00[ASN][1000 genomes] |
| rs6050216 | 1.00[ASN][1000 genomes] |
| rs6050217 | 1.00[ASN][1000 genomes] |
| rs6050218 | 1.00[ASN][1000 genomes] |
| rs6050225 | 1.00[ASN][1000 genomes] |
| rs6050229 | 1.00[ASN][1000 genomes] |
| rs6050230 | 1.00[ASN][1000 genomes] |
| rs6050231 | 1.00[ASN][1000 genomes] |
| rs6050232 | 1.00[ASN][1000 genomes] |
| rs6050233 | 1.00[ASN][1000 genomes] |
| rs6050234 | 1.00[ASN][1000 genomes] |
| rs6050235 | 1.00[ASN][1000 genomes] |
| rs6050236 | 1.00[ASN][1000 genomes] |
| rs6050237 | 1.00[ASN][1000 genomes] |
| rs6050238 | 1.00[ASN][1000 genomes] |
| rs6050243 | 1.00[ASN][1000 genomes] |
| rs6050252 | 1.00[ASN][1000 genomes] |
| rs6050257 | 1.00[CEU][hapmap] |
| rs61040777 | 1.00[ASN][1000 genomes] |
| rs6106952 | 0.82[EUR][1000 genomes] |
| rs6106964 | 1.00[ASN][1000 genomes] |
| rs6106974 | 1.00[ASN][1000 genomes] |
| rs6106976 | 1.00[ASN][1000 genomes] |
| rs6106977 | 1.00[ASN][1000 genomes] |
| rs6106979 | 1.00[ASN][1000 genomes] |
| rs6106980 | 1.00[ASN][1000 genomes] |
| rs6106981 | 1.00[ASN][1000 genomes] |
| rs6106983 | 1.00[ASN][1000 genomes] |
| rs6106985 | 1.00[ASN][1000 genomes] |
| rs6106986 | 1.00[ASN][1000 genomes] |
| rs6114875 | 0.92[EUR][1000 genomes] |
| rs6114886 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6114888 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6114931 | 1.00[ASN][1000 genomes] |
| rs6114939 | 1.00[ASN][1000 genomes] |
| rs6114942 | 1.00[ASN][1000 genomes] |
| rs6114943 | 1.00[ASN][1000 genomes] |
| rs6114944 | 1.00[ASN][1000 genomes] |
| rs6114945 | 1.00[ASN][1000 genomes] |
| rs6114946 | 1.00[ASN][1000 genomes] |
| rs6114949 | 1.00[ASN][1000 genomes] |
| rs6114950 | 1.00[ASN][1000 genomes] |
| rs6114951 | 1.00[ASN][1000 genomes] |
| rs6114953 | 1.00[ASN][1000 genomes] |
| rs6114954 | 1.00[ASN][1000 genomes] |
| rs6114956 | 1.00[ASN][1000 genomes] |
| rs6114959 | 1.00[ASN][1000 genomes] |
| rs6114960 | 1.00[ASN][1000 genomes] |
| rs6114966 | 1.00[ASN][1000 genomes] |
| rs6114967 | 1.00[ASN][1000 genomes] |
| rs6114968 | 1.00[ASN][1000 genomes] |
| rs6114970 | 1.00[ASN][1000 genomes] |
| rs6114976 | 1.00[ASN][1000 genomes] |
| rs6114979 | 1.00[ASN][1000 genomes] |
| rs6114983 | 1.00[ASN][1000 genomes] |
| rs6114986 | 1.00[ASN][1000 genomes] |
| rs6114987 | 1.00[ASN][1000 genomes] |
| rs6114991 | 1.00[ASN][1000 genomes] |
| rs6114998 | 1.00[ASN][1000 genomes] |
| rs6114999 | 1.00[ASN][1000 genomes] |
| rs6115000 | 1.00[ASN][1000 genomes] |
| rs6115001 | 1.00[ASN][1000 genomes] |
| rs6115002 | 1.00[ASN][1000 genomes] |
| rs6115003 | 1.00[ASN][1000 genomes] |
| rs61535093 | 1.00[ASN][1000 genomes] |
| rs61662783 | 1.00[ASN][1000 genomes] |
| rs62215084 | 1.00[ASN][1000 genomes] |
| rs62215085 | 1.00[ASN][1000 genomes] |
| rs62215112 | 1.00[ASN][1000 genomes] |
| rs62215114 | 1.00[ASN][1000 genomes] |
| rs62215121 | 1.00[ASN][1000 genomes] |
| rs62215127 | 1.00[ASN][1000 genomes] |
| rs62215786 | 1.00[ASN][1000 genomes] |
| rs62216716 | 1.00[ASN][1000 genomes] |
| rs62216719 | 1.00[ASN][1000 genomes] |
| rs6515557 | 1.00[ASN][1000 genomes] |
| rs7261161 | 1.00[ASN][1000 genomes] |
| rs7262621 | 0.82[EUR][1000 genomes] |
| rs7262640 | 0.82[EUR][1000 genomes] |
| rs7263138 | 1.00[ASN][1000 genomes] |
| rs7264679 | 1.00[ASN][1000 genomes] |
| rs7271963 | 1.00[ASN][1000 genomes] |
| rs7274899 | 1.00[ASN][1000 genomes] |
| rs727964 | 1.00[ASN][1000 genomes] |
| rs73335473 | 0.84[EUR][1000 genomes] |
| rs73335492 | 0.84[EUR][1000 genomes] |
| rs73337274 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73339206 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73344911 | 1.00[ASN][1000 genomes] |
| rs73903961 | 0.82[EUR][1000 genomes] |
| rs73903963 | 0.82[EUR][1000 genomes] |
| rs73903968 | 0.82[EUR][1000 genomes] |
| rs8114913 | 1.00[ASN][1000 genomes] |
| rs8116161 | 1.00[YRI][hapmap] |
| rs8119131 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8121643 | 1.00[ASN][1000 genomes] |
| rs8121732 | 1.00[ASN][1000 genomes] |
| rs910132 | 1.00[ASN][1000 genomes] |
| rs910133 | 1.00[ASN][1000 genomes] |
| rs914306 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9753729 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1061412 | chr20:24629468-24887869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv544216 | chr20:24629468-24887869 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1061455 | chr20:24733120-24861801 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv544218 | chr20:24733120-24861801 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1062140 | chr20:24807962-25304054 | Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 6 | nsv544219 | chr20:24807962-25304054 | Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 7 | nsv1056345 | chr20:24819570-25168159 | Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24834600-24837200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
