Variant report

Variant	rs6050041
Chromosome Location	chr20:24831241-24831242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24826869..24829135-chr20:24829517..24831916,2	MCF-7	breast:

Extended variants
information (count: 218 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:211)

rs_ID	r²[population]
rs1045772	1.00[ASN][1000 genomes]
rs11087490	1.00[ASN][1000 genomes]
rs11087492	1.00[ASN][1000 genomes]
rs1109682	0.82[EUR][1000 genomes]
rs1113871	1.00[ASN][1000 genomes]
rs11696281	1.00[ASN][1000 genomes]
rs11697253	1.00[ASN][1000 genomes]
rs11697953	1.00[ASN][1000 genomes]
rs11697965	1.00[ASN][1000 genomes]
rs11698426	1.00[ASN][1000 genomes]
rs11698613	1.00[ASN][1000 genomes]
rs11699487	1.00[ASN][1000 genomes]
rs11908480	0.82[EUR][1000 genomes]
rs12329446	1.00[ASN][1000 genomes]
rs12329447	1.00[ASN][1000 genomes]
rs12480836	1.00[ASN][1000 genomes]
rs1467769	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555157	1.00[ASN][1000 genomes]
rs1555158	1.00[ASN][1000 genomes]
rs1576649	1.00[ASN][1000 genomes]
rs2151460	1.00[EUR][1000 genomes]
rs2387573	1.00[ASN][1000 genomes]
rs28758726	1.00[ASN][1000 genomes]
rs2892278	1.00[ASN][1000 genomes]
rs34799975	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356723	1.00[ASN][1000 genomes]
rs45501494	1.00[ASN][1000 genomes]
rs55821861	1.00[ASN][1000 genomes]
rs55849863	1.00[ASN][1000 genomes]
rs55875217	1.00[ASN][1000 genomes]
rs55908555	1.00[ASN][1000 genomes]
rs55917150	1.00[ASN][1000 genomes]
rs55940806	1.00[ASN][1000 genomes]
rs55949243	1.00[ASN][1000 genomes]
rs56033853	1.00[ASN][1000 genomes]
rs56110984	1.00[ASN][1000 genomes]
rs56111326	1.00[ASN][1000 genomes]
rs56189258	1.00[ASN][1000 genomes]
rs56222810	1.00[ASN][1000 genomes]
rs56258611	1.00[ASN][1000 genomes]
rs56311685	1.00[ASN][1000 genomes]
rs56313512	1.00[ASN][1000 genomes]
rs56332860	1.00[ASN][1000 genomes]
rs57913893	1.00[ASN][1000 genomes]
rs58751902	1.00[ASN][1000 genomes]
rs59744473	1.00[ASN][1000 genomes]
rs6036921	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036927	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036928	1.00[ASN][1000 genomes]
rs6036932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036949	1.00[ASN][1000 genomes]
rs6036980	1.00[ASN][1000 genomes]
rs6036985	1.00[ASN][1000 genomes]
rs6036986	1.00[ASN][1000 genomes]
rs6036988	1.00[ASN][1000 genomes]
rs6036989	1.00[ASN][1000 genomes]
rs6036990	1.00[ASN][1000 genomes]
rs6036991	1.00[ASN][1000 genomes]
rs6036992	1.00[ASN][1000 genomes]
rs6036993	1.00[ASN][1000 genomes]
rs6036994	1.00[ASN][1000 genomes]
rs6036997	1.00[ASN][1000 genomes]
rs6036999	1.00[ASN][1000 genomes]
rs6037000	1.00[ASN][1000 genomes]
rs6037001	1.00[ASN][1000 genomes]
rs6037002	1.00[ASN][1000 genomes]
rs6050001	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050003	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050005	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050006	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050013	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050014	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050016	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050017	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050019	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050023	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050061	1.00[ASN][1000 genomes]
rs6050075	1.00[ASN][1000 genomes]
rs6050107	1.00[ASN][1000 genomes]
rs6050126	1.00[ASN][1000 genomes]
rs6050130	1.00[ASN][1000 genomes]
rs6050143	1.00[ASN][1000 genomes]
rs6050151	1.00[ASN][1000 genomes]
rs6050152	1.00[ASN][1000 genomes]
rs6050160	1.00[ASN][1000 genomes]
rs6050161	1.00[ASN][1000 genomes]
rs6050162	1.00[ASN][1000 genomes]
rs6050163	1.00[ASN][1000 genomes]
rs6050164	1.00[ASN][1000 genomes]
rs6050166	1.00[ASN][1000 genomes]
rs6050167	1.00[ASN][1000 genomes]
rs6050168	1.00[ASN][1000 genomes]
rs6050169	1.00[ASN][1000 genomes]
rs6050171	1.00[ASN][1000 genomes]
rs6050176	1.00[ASN][1000 genomes]
rs6050180	1.00[ASN][1000 genomes]
rs6050183	1.00[ASN][1000 genomes]
rs6050184	1.00[ASN][1000 genomes]
rs6050185	1.00[ASN][1000 genomes]
rs6050186	1.00[ASN][1000 genomes]
rs6050187	1.00[ASN][1000 genomes]
rs6050189	1.00[ASN][1000 genomes]
rs6050191	1.00[ASN][1000 genomes]
rs6050193	1.00[ASN][1000 genomes]
rs6050197	1.00[ASN][1000 genomes]
rs6050202	1.00[ASN][1000 genomes]
rs6050203	1.00[ASN][1000 genomes]
rs6050204	1.00[ASN][1000 genomes]
rs6050205	1.00[ASN][1000 genomes]
rs6050208	1.00[ASN][1000 genomes]
rs6050209	1.00[ASN][1000 genomes]
rs6050216	1.00[ASN][1000 genomes]
rs6050217	1.00[ASN][1000 genomes]
rs6050218	1.00[ASN][1000 genomes]
rs6050225	1.00[ASN][1000 genomes]
rs6050229	1.00[ASN][1000 genomes]
rs6050230	1.00[ASN][1000 genomes]
rs6050231	1.00[ASN][1000 genomes]
rs6050232	1.00[ASN][1000 genomes]
rs6050233	1.00[ASN][1000 genomes]
rs6050234	1.00[ASN][1000 genomes]
rs6050235	1.00[ASN][1000 genomes]
rs6050236	1.00[ASN][1000 genomes]
rs6050237	1.00[ASN][1000 genomes]
rs6050238	1.00[ASN][1000 genomes]
rs6050243	1.00[ASN][1000 genomes]
rs6050252	1.00[ASN][1000 genomes]
rs61040777	1.00[ASN][1000 genomes]
rs6106952	0.82[EUR][1000 genomes]
rs6106964	1.00[ASN][1000 genomes]
rs6106974	1.00[ASN][1000 genomes]
rs6106976	1.00[ASN][1000 genomes]
rs6106977	1.00[ASN][1000 genomes]
rs6106979	1.00[ASN][1000 genomes]
rs6106980	1.00[ASN][1000 genomes]
rs6106981	1.00[ASN][1000 genomes]
rs6106983	1.00[ASN][1000 genomes]
rs6114875	0.92[EUR][1000 genomes]
rs6114886	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114888	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114931	1.00[ASN][1000 genomes]
rs6114939	1.00[ASN][1000 genomes]
rs6114942	1.00[ASN][1000 genomes]
rs6114943	1.00[ASN][1000 genomes]
rs6114944	1.00[ASN][1000 genomes]
rs6114945	1.00[ASN][1000 genomes]
rs6114946	1.00[ASN][1000 genomes]
rs6114949	1.00[ASN][1000 genomes]
rs6114950	1.00[ASN][1000 genomes]
rs6114951	1.00[ASN][1000 genomes]
rs6114953	1.00[ASN][1000 genomes]
rs6114954	1.00[ASN][1000 genomes]
rs6114956	1.00[ASN][1000 genomes]
rs6114959	1.00[ASN][1000 genomes]
rs6114960	1.00[ASN][1000 genomes]
rs6114966	1.00[ASN][1000 genomes]
rs6114967	1.00[ASN][1000 genomes]
rs6114968	1.00[ASN][1000 genomes]
rs6114970	1.00[ASN][1000 genomes]
rs6114976	1.00[ASN][1000 genomes]
rs6114979	1.00[ASN][1000 genomes]
rs6114983	1.00[ASN][1000 genomes]
rs6114986	1.00[ASN][1000 genomes]
rs6114987	1.00[ASN][1000 genomes]
rs6114991	1.00[ASN][1000 genomes]
rs6114998	1.00[ASN][1000 genomes]
rs6114999	1.00[ASN][1000 genomes]
rs6115000	1.00[ASN][1000 genomes]
rs6115001	1.00[ASN][1000 genomes]
rs61535093	1.00[ASN][1000 genomes]
rs61662783	1.00[ASN][1000 genomes]
rs62215084	1.00[ASN][1000 genomes]
rs62215085	1.00[ASN][1000 genomes]
rs62215112	1.00[ASN][1000 genomes]
rs62215114	1.00[ASN][1000 genomes]
rs62215121	1.00[ASN][1000 genomes]
rs62215127	1.00[ASN][1000 genomes]
rs62215786	1.00[ASN][1000 genomes]
rs62216716	1.00[ASN][1000 genomes]
rs62216719	1.00[ASN][1000 genomes]
rs6515557	1.00[ASN][1000 genomes]
rs7261161	1.00[ASN][1000 genomes]
rs7262621	0.82[EUR][1000 genomes]
rs7262640	0.82[EUR][1000 genomes]
rs7263138	1.00[ASN][1000 genomes]
rs7264679	1.00[ASN][1000 genomes]
rs7271963	1.00[ASN][1000 genomes]
rs7274899	1.00[ASN][1000 genomes]
rs727964	1.00[ASN][1000 genomes]
rs73335473	0.84[EUR][1000 genomes]
rs73335492	0.84[EUR][1000 genomes]
rs73337274	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339206	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344911	1.00[ASN][1000 genomes]
rs73903961	0.82[EUR][1000 genomes]
rs73903963	0.82[EUR][1000 genomes]
rs73903968	0.82[EUR][1000 genomes]
rs8114913	1.00[ASN][1000 genomes]
rs8119131	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8121643	1.00[ASN][1000 genomes]
rs8121732	1.00[ASN][1000 genomes]
rs910132	1.00[ASN][1000 genomes]
rs910133	1.00[ASN][1000 genomes]
rs914306	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9753729	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24831200-24832600	Enhancers	GM12878-XiMat	blood

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