Variant report

Variant	rs56110984
Chromosome Location	chr20:24992800-24992801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24972188..24974753-chr20:24992355..24994002,2	K562	blood:

Variant related genes	Relation type
ENSG00000101474	Chromatin interaction

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs1045772	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11087490	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11087492	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113871	1.00[ASN][1000 genomes]
rs11696281	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11697253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11697953	1.00[ASN][1000 genomes]
rs11697965	1.00[ASN][1000 genomes]
rs11698426	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11698613	1.00[ASN][1000 genomes]
rs11699487	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12329446	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12329447	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480836	1.00[ASN][1000 genomes]
rs1555157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555158	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576649	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2387573	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758726	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2892278	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34799975	1.00[ASN][1000 genomes]
rs4356723	1.00[ASN][1000 genomes]
rs45501494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821861	1.00[ASN][1000 genomes]
rs55849863	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55875217	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55908555	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917150	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55940806	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55949243	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56033853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56111326	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56189258	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222810	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56258611	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311685	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56312312	0.82[AFR][1000 genomes]
rs56313512	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56332860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58751902	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59744473	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036932	1.00[ASN][1000 genomes]
rs6036938	1.00[ASN][1000 genomes]
rs6036944	1.00[ASN][1000 genomes]
rs6036949	1.00[ASN][1000 genomes]
rs6036980	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036985	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036986	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036988	1.00[ASN][1000 genomes]
rs6036989	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036990	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036991	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036992	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036993	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036994	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036997	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036999	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037000	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037001	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037002	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6037007	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050041	1.00[ASN][1000 genomes]
rs6050042	1.00[ASN][1000 genomes]
rs6050045	1.00[ASN][1000 genomes]
rs6050047	1.00[ASN][1000 genomes]
rs6050049	1.00[ASN][1000 genomes]
rs6050061	1.00[ASN][1000 genomes]
rs6050075	1.00[ASN][1000 genomes]
rs6050107	1.00[ASN][1000 genomes]
rs6050126	1.00[ASN][1000 genomes]
rs6050130	1.00[ASN][1000 genomes]
rs6050143	1.00[ASN][1000 genomes]
rs6050151	1.00[ASN][1000 genomes]
rs6050152	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050160	1.00[ASN][1000 genomes]
rs6050161	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050162	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050163	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050164	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050166	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050167	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050168	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050169	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050171	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050176	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050180	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050182	0.82[AFR][1000 genomes]
rs6050183	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050184	1.00[ASN][1000 genomes]
rs6050185	1.00[ASN][1000 genomes]
rs6050186	1.00[ASN][1000 genomes]
rs6050187	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050189	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6050191	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6050193	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050197	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050202	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050203	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050204	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050205	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050206	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6050208	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050209	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050216	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050217	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050218	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050225	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050229	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050230	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050231	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050232	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050233	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050234	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050235	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050236	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050237	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050238	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6050252	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61040777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106964	1.00[ASN][1000 genomes]
rs6106974	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6106976	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6106977	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106979	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106980	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106981	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106983	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106985	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106986	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114931	1.00[ASN][1000 genomes]
rs6114939	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114942	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114943	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114944	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114945	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114946	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114949	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114950	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114951	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6114953	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114954	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114956	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114959	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114960	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114966	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114967	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114968	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114970	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114976	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114979	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114983	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114986	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114987	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114991	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114998	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114999	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115002	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6115003	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61535093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61662783	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62215084	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215085	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215112	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215114	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215121	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215127	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62216716	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62216719	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62217177	0.80[EUR][1000 genomes]
rs6515557	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7261161	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7263138	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7264679	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7271963	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7274899	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727964	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73344911	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8114913	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8121643	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8121732	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs910132	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910133	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9753729	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv585745	chr20:24932028-25007089	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24976000-24999000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr20:24981600-25003600	Weak transcription	Fetal Heart	heart
3	chr20:24981800-24992800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr20:24981800-24997200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:24983200-24996800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr20:24983200-25003800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr20:24983200-25005000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr20:24983200-25007800	Strong transcription	Primary T cells from cord blood	blood
9	chr20:24983200-25008200	Strong transcription	Primary B cells from cord blood	blood
10	chr20:24983400-24995400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr20:24983400-24996600	Strong transcription	Placenta	Placenta
12	chr20:24983800-24994800	Strong transcription	Primary hematopoietic stem cells	blood
13	chr20:24983800-25006800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:24984600-24997200	Strong transcription	Fetal Intestine Large	intestine
15	chr20:24985000-24997200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr20:24985000-24997600	Strong transcription	Fetal Intestine Small	intestine
17	chr20:24985000-25004400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr20:24985000-25005600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr20:24985200-24995800	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr20:24985200-25002600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr20:24985200-25003200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr20:24985200-25007800	Strong transcription	Fetal Muscle Leg	muscle
23	chr20:24985600-24996600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr20:24985800-24995800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr20:24985800-24997200	Strong transcription	Lung	lung
26	chr20:24985800-24997600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr20:24985800-25002400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr20:24985800-25004200	Strong transcription	Thymus	Thymus
29	chr20:24985800-25004400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr20:24985800-25005000	Strong transcription	Adipose Nuclei	Adipose
31	chr20:24985800-25005800	Strong transcription	Spleen	Spleen
32	chr20:24985800-25006800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr20:24985800-25007600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr20:24985800-25007800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr20:24986000-24994800	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr20:24986000-24996200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr20:24986000-25004800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr20:24986200-24994400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr20:24986200-25012400	Strong transcription	Dnd41	blood
40	chr20:24986400-24997000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr20:24986400-25003800	Strong transcription	Aorta	Aorta
42	chr20:24986400-25004400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr20:24986400-25012400	Weak transcription	Fetal Brain Male	brain
44	chr20:24986600-24995800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr20:24986600-24995800	Strong transcription	Fetal Thymus	thymus
46	chr20:24986600-24997400	Strong transcription	Ovary	ovary
47	chr20:24986800-24993000	Weak transcription	Fetal Brain Female	brain
48	chr20:24986800-24997200	Strong transcription	Brain Germinal Matrix	brain
49	chr20:24987000-24997400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr20:24987200-24996600	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links