The 2.0 version of rSNPBase

Variant report

Variant rs6106986
Chromosome Location chr20:25001862-25001863
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24981600-25003600 Weak transcription Fetal Heart heart
2 chr20:24983200-25003800 Strong transcription Primary T cells fromperipheralblood blood
3 chr20:24983200-25005000 Strong transcription Primary T helper cells fromperipheralblood blood
4 chr20:24983200-25007800 Strong transcription Primary T cells from cord blood blood
5 chr20:24983200-25008200 Strong transcription Primary B cells from cord blood blood
6 chr20:24983800-25006800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr20:24985000-25004400 Strong transcription Monocytes-CD14+_RO01746 blood
8 chr20:24985000-25005600 Strong transcription Primary T helper naive cells fromperipheralblood blood
9 chr20:24985200-25002600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr20:24985200-25003200 Strong transcription Fetal Adrenal Gland Adrenal Gland
11 chr20:24985200-25007800 Strong transcription Fetal Muscle Leg muscle
12 chr20:24985800-25002400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
13 chr20:24985800-25004200 Strong transcription Thymus Thymus
14 chr20:24985800-25004400 Strong transcription Primary monocytes fromperipheralblood blood
15 chr20:24985800-25005000 Strong transcription Adipose Nuclei Adipose
16 chr20:24985800-25005800 Strong transcription Spleen Spleen
17 chr20:24985800-25006800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr20:24985800-25007600 Strong transcription Primary T regulatory cells fromperipheralblood blood
19 chr20:24985800-25007800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
20 chr20:24986000-25004800 Strong transcription Primary T helper cells PMA-I stimulated --
21 chr20:24986200-25012400 Strong transcription Dnd41 blood
22 chr20:24986400-25003800 Strong transcription Aorta Aorta
23 chr20:24986400-25004400 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr20:24986400-25012400 Weak transcription Fetal Brain Male brain
25 chr20:24987400-25005200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr20:24987600-25007800 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr20:24988200-25016400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr20:24991000-25002800 Strong transcription Duodenum Smooth Muscle Duodenum
29 chr20:24993400-25005200 Weak transcription Psoas Muscle Psoas
30 chr20:24993800-25013000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr20:24994000-25013000 Weak transcription Small Intestine intestine
32 chr20:24994800-25006800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr20:24994800-25013200 Weak transcription Fetal Brain Female brain
34 chr20:24995800-25016400 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr20:24996200-25010200 Weak transcription Colon Smooth Muscle Colon
36 chr20:24996400-25002600 Strong transcription Primary hematopoietic stem cells blood
37 chr20:24996600-25005200 Genic enhancers Skeletal Muscle Female skeletal muscle
38 chr20:24996600-25007800 Genic enhancers Placenta Placenta
39 chr20:24997000-25002600 Strong transcription Primary neutrophils fromperipheralblood blood
40 chr20:24997200-25007400 Strong transcription Primary B cells from peripheral blood blood
41 chr20:24997200-25016000 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr20:24997400-25007800 Strong transcription Fetal Stomach stomach
43 chr20:24997400-25016400 Weak transcription GM12878-XiMat blood
44 chr20:24997600-25002000 Genic enhancers Skeletal Muscle Male skeletal muscle
45 chr20:24997600-25002200 Weak transcription Brain Angular Gyrus brain
46 chr20:24998600-25011400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr20:24998600-25016600 Weak transcription Liver Liver
48 chr20:24998800-25002200 Strong transcription Duodenum Mucosa Duodenum
49 chr20:24998800-25002600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr20:24998800-25003000 Weak transcription NHEK skin

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Last update: Aug 31, 2015