The 2.0 version of rSNPBase

Variant report

Variant rs6050197
Chromosome Location chr20:24934970-24934971
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24928600-24940400 Weak transcription Right Atrium heart
2 chr20:24929600-24936400 Weak transcription Fetal Intestine Small intestine
3 chr20:24930000-24936400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr20:24930200-24936800 Enhancers Primary monocytes fromperipheralblood blood
5 chr20:24930200-24939400 Weak transcription Right Ventricle heart
6 chr20:24930400-24935000 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr20:24930400-24939000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr20:24930600-24935600 Weak transcription Primary T cells from cord blood blood
9 chr20:24930600-24943000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr20:24930800-24935000 Weak transcription Thymus Thymus
11 chr20:24930800-24938200 Weak transcription Colonic Mucosa Colon
12 chr20:24931000-24938000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr20:24931200-24935000 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
14 chr20:24931200-24936400 Weak transcription Esophagus oesophagus
15 chr20:24931200-24936400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr20:24931400-24939600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr20:24931600-24938000 Weak transcription NHLF lung
18 chr20:24931600-24938600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr20:24931800-24936400 Weak transcription Muscle Satellite Cultured Cells --
20 chr20:24932000-24943000 Weak transcription HSMM muscle
21 chr20:24932000-24943400 Weak transcription HSMMtube muscle
22 chr20:24932200-24941000 Weak transcription A549 lung
23 chr20:24932400-24936000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
24 chr20:24932400-24936000 Enhancers Monocytes-CD14+_RO01746 blood
25 chr20:24932600-24938000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr20:24932600-24938200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr20:24932600-24939200 Weak transcription iPS-15b Cell Line embryonic stem cell
28 chr20:24933000-24935000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr20:24933000-24935600 Weak transcription Primary hematopoietic stem cells blood
30 chr20:24933000-24936600 Weak transcription Brain Anterior Caudate brain
31 chr20:24933000-24937600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr20:24933200-24936400 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr20:24933200-24936400 Weak transcription Brain Germinal Matrix brain
34 chr20:24933200-24937000 Weak transcription Fetal Brain Female brain
35 chr20:24933200-24940400 Weak transcription Colon Smooth Muscle Colon
36 chr20:24933400-24935600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr20:24933400-24936600 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr20:24933400-24938000 Weak transcription Left Ventricle heart
39 chr20:24933400-24938600 Weak transcription Aorta Aorta
40 chr20:24933600-24935000 Strong transcription Spleen Spleen
41 chr20:24933600-24935600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr20:24933600-24939000 Enhancers Primary T killer naive cells fromperipheralblood blood
43 chr20:24933800-24935000 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
44 chr20:24933800-24935000 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
45 chr20:24933800-24935200 Genic enhancers Fetal Muscle Leg muscle
46 chr20:24933800-24936600 Weak transcription Placenta Placenta
47 chr20:24933800-24936800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr20:24933800-24937400 Weak transcription HepG2 liver
49 chr20:24933800-24937400 Weak transcription HMEC breast
50 chr20:24933800-24941600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015