Variant report
Variant | rs73339206 |
---|---|
Chromosome Location | chr20:24822932-24822933 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:24820307..24822750-chr20:24822757..24824794,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1045772 | 1.00[ASN][1000 genomes] |
rs11087490 | 1.00[ASN][1000 genomes] |
rs11087492 | 1.00[ASN][1000 genomes] |
rs1109682 | 0.92[EUR][1000 genomes] |
rs1113871 | 1.00[ASN][1000 genomes] |
rs11696281 | 1.00[ASN][1000 genomes] |
rs11697953 | 1.00[ASN][1000 genomes] |
rs11697965 | 1.00[ASN][1000 genomes] |
rs11698426 | 1.00[ASN][1000 genomes] |
rs11698613 | 1.00[ASN][1000 genomes] |
rs11908480 | 0.92[EUR][1000 genomes] |
rs12329446 | 1.00[ASN][1000 genomes] |
rs12329447 | 1.00[ASN][1000 genomes] |
rs12480836 | 1.00[ASN][1000 genomes] |
rs1467769 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1555157 | 1.00[ASN][1000 genomes] |
rs1555158 | 1.00[ASN][1000 genomes] |
rs1576649 | 1.00[ASN][1000 genomes] |
rs2151460 | 0.92[EUR][1000 genomes] |
rs2387573 | 1.00[ASN][1000 genomes] |
rs28758726 | 1.00[ASN][1000 genomes] |
rs2892278 | 1.00[ASN][1000 genomes] |
rs34799975 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4356723 | 1.00[ASN][1000 genomes] |
rs55821861 | 1.00[ASN][1000 genomes] |
rs55849863 | 1.00[ASN][1000 genomes] |
rs55875217 | 1.00[ASN][1000 genomes] |
rs55908555 | 1.00[ASN][1000 genomes] |
rs55917150 | 1.00[ASN][1000 genomes] |
rs55940806 | 1.00[ASN][1000 genomes] |
rs55949243 | 1.00[ASN][1000 genomes] |
rs56111326 | 1.00[ASN][1000 genomes] |
rs56189258 | 1.00[ASN][1000 genomes] |
rs56258611 | 1.00[ASN][1000 genomes] |
rs56311685 | 1.00[ASN][1000 genomes] |
rs56313512 | 1.00[ASN][1000 genomes] |
rs56332860 | 1.00[ASN][1000 genomes] |
rs58751902 | 1.00[ASN][1000 genomes] |
rs59744473 | 1.00[ASN][1000 genomes] |
rs6036921 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6036927 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6036928 | 1.00[ASN][1000 genomes] |
rs6036932 | 0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6036938 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6036944 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6036949 | 1.00[ASN][1000 genomes] |
rs6036980 | 1.00[ASN][1000 genomes] |
rs6036985 | 1.00[ASN][1000 genomes] |
rs6036986 | 1.00[ASN][1000 genomes] |
rs6036988 | 1.00[ASN][1000 genomes] |
rs6036989 | 1.00[ASN][1000 genomes] |
rs6036990 | 1.00[ASN][1000 genomes] |
rs6036991 | 1.00[ASN][1000 genomes] |
rs6036992 | 1.00[ASN][1000 genomes] |
rs6036993 | 1.00[ASN][1000 genomes] |
rs6036994 | 1.00[ASN][1000 genomes] |
rs6036997 | 1.00[ASN][1000 genomes] |
rs6036999 | 1.00[ASN][1000 genomes] |
rs6037000 | 1.00[ASN][1000 genomes] |
rs6037001 | 1.00[ASN][1000 genomes] |
rs6037002 | 1.00[ASN][1000 genomes] |
rs6050001 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050003 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050005 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050006 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050013 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050014 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050016 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050017 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050019 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050023 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050031 | 0.86[AFR][1000 genomes] |
rs6050041 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050042 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050045 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050047 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050049 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6050061 | 1.00[ASN][1000 genomes] |
rs6050075 | 1.00[ASN][1000 genomes] |
rs6050107 | 1.00[ASN][1000 genomes] |
rs6050126 | 1.00[ASN][1000 genomes] |
rs6050130 | 1.00[ASN][1000 genomes] |
rs6050143 | 1.00[ASN][1000 genomes] |
rs6050151 | 1.00[ASN][1000 genomes] |
rs6050152 | 1.00[ASN][1000 genomes] |
rs6050160 | 1.00[ASN][1000 genomes] |
rs6050161 | 1.00[ASN][1000 genomes] |
rs6050162 | 1.00[ASN][1000 genomes] |
rs6050163 | 1.00[ASN][1000 genomes] |
rs6050164 | 1.00[ASN][1000 genomes] |
rs6050166 | 1.00[ASN][1000 genomes] |
rs6050167 | 1.00[ASN][1000 genomes] |
rs6050168 | 1.00[ASN][1000 genomes] |
rs6050169 | 1.00[ASN][1000 genomes] |
rs6050171 | 1.00[ASN][1000 genomes] |
rs6050176 | 1.00[ASN][1000 genomes] |
rs6050180 | 1.00[ASN][1000 genomes] |
rs6050183 | 1.00[ASN][1000 genomes] |
rs6050184 | 1.00[ASN][1000 genomes] |
rs6050185 | 1.00[ASN][1000 genomes] |
rs6050186 | 1.00[ASN][1000 genomes] |
rs6050187 | 1.00[ASN][1000 genomes] |
rs6050189 | 1.00[ASN][1000 genomes] |
rs6050191 | 1.00[ASN][1000 genomes] |
rs6050193 | 1.00[ASN][1000 genomes] |
rs6050197 | 1.00[ASN][1000 genomes] |
rs6050202 | 1.00[ASN][1000 genomes] |
rs6050203 | 1.00[ASN][1000 genomes] |
rs6050204 | 1.00[ASN][1000 genomes] |
rs6050205 | 1.00[ASN][1000 genomes] |
rs6050208 | 1.00[ASN][1000 genomes] |
rs6050209 | 1.00[ASN][1000 genomes] |
rs6050216 | 1.00[ASN][1000 genomes] |
rs6050217 | 1.00[ASN][1000 genomes] |
rs6050218 | 1.00[ASN][1000 genomes] |
rs6050225 | 1.00[ASN][1000 genomes] |
rs6050229 | 1.00[ASN][1000 genomes] |
rs6050230 | 1.00[ASN][1000 genomes] |
rs6050231 | 1.00[ASN][1000 genomes] |
rs6050232 | 1.00[ASN][1000 genomes] |
rs6050233 | 1.00[ASN][1000 genomes] |
rs6050234 | 1.00[ASN][1000 genomes] |
rs6050235 | 1.00[ASN][1000 genomes] |
rs6050236 | 1.00[ASN][1000 genomes] |
rs6050237 | 1.00[ASN][1000 genomes] |
rs6050238 | 1.00[ASN][1000 genomes] |
rs6050243 | 1.00[ASN][1000 genomes] |
rs6106952 | 0.92[EUR][1000 genomes] |
rs6106964 | 1.00[ASN][1000 genomes] |
rs6106974 | 1.00[ASN][1000 genomes] |
rs6106976 | 1.00[ASN][1000 genomes] |
rs6106977 | 1.00[ASN][1000 genomes] |
rs6106979 | 1.00[ASN][1000 genomes] |
rs6106980 | 1.00[ASN][1000 genomes] |
rs6106981 | 1.00[ASN][1000 genomes] |
rs6106983 | 1.00[ASN][1000 genomes] |
rs6114875 | 1.00[EUR][1000 genomes] |
rs6114886 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6114888 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6114931 | 1.00[ASN][1000 genomes] |
rs6114939 | 1.00[ASN][1000 genomes] |
rs6114942 | 1.00[ASN][1000 genomes] |
rs6114943 | 1.00[ASN][1000 genomes] |
rs6114944 | 1.00[ASN][1000 genomes] |
rs6114945 | 1.00[ASN][1000 genomes] |
rs6114946 | 1.00[ASN][1000 genomes] |
rs6114949 | 1.00[ASN][1000 genomes] |
rs6114950 | 1.00[ASN][1000 genomes] |
rs6114951 | 1.00[ASN][1000 genomes] |
rs6114953 | 1.00[ASN][1000 genomes] |
rs6114954 | 1.00[ASN][1000 genomes] |
rs6114956 | 1.00[ASN][1000 genomes] |
rs6114959 | 1.00[ASN][1000 genomes] |
rs6114960 | 1.00[ASN][1000 genomes] |
rs6114966 | 1.00[ASN][1000 genomes] |
rs6114967 | 1.00[ASN][1000 genomes] |
rs6114968 | 1.00[ASN][1000 genomes] |
rs6114970 | 1.00[ASN][1000 genomes] |
rs6114976 | 1.00[ASN][1000 genomes] |
rs6114979 | 1.00[ASN][1000 genomes] |
rs6114983 | 1.00[ASN][1000 genomes] |
rs6114986 | 1.00[ASN][1000 genomes] |
rs6114987 | 1.00[ASN][1000 genomes] |
rs6114991 | 1.00[ASN][1000 genomes] |
rs6114998 | 1.00[ASN][1000 genomes] |
rs6114999 | 1.00[ASN][1000 genomes] |
rs61662783 | 1.00[ASN][1000 genomes] |
rs62215084 | 1.00[ASN][1000 genomes] |
rs62215085 | 1.00[ASN][1000 genomes] |
rs62215112 | 1.00[ASN][1000 genomes] |
rs62215114 | 1.00[ASN][1000 genomes] |
rs62215121 | 1.00[ASN][1000 genomes] |
rs62215127 | 1.00[ASN][1000 genomes] |
rs62215786 | 1.00[ASN][1000 genomes] |
rs62216716 | 1.00[ASN][1000 genomes] |
rs62216719 | 1.00[ASN][1000 genomes] |
rs6515557 | 1.00[ASN][1000 genomes] |
rs7261161 | 1.00[ASN][1000 genomes] |
rs7262621 | 0.92[EUR][1000 genomes] |
rs7262640 | 0.92[EUR][1000 genomes] |
rs7263138 | 1.00[ASN][1000 genomes] |
rs7264679 | 1.00[ASN][1000 genomes] |
rs7271963 | 1.00[ASN][1000 genomes] |
rs7274899 | 1.00[ASN][1000 genomes] |
rs727964 | 1.00[ASN][1000 genomes] |
rs73335473 | 0.92[EUR][1000 genomes] |
rs73335492 | 0.92[EUR][1000 genomes] |
rs73337274 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73344911 | 1.00[ASN][1000 genomes] |
rs73903961 | 0.92[EUR][1000 genomes] |
rs73903963 | 0.92[EUR][1000 genomes] |
rs73903968 | 0.92[EUR][1000 genomes] |
rs8114913 | 1.00[ASN][1000 genomes] |
rs8119131 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8121643 | 1.00[ASN][1000 genomes] |
rs8121732 | 1.00[ASN][1000 genomes] |
rs910132 | 1.00[ASN][1000 genomes] |
rs910133 | 1.00[ASN][1000 genomes] |
rs914306 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9753729 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1061412 | chr20:24629468-24887869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv544216 | chr20:24629468-24887869 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1061455 | chr20:24733120-24861801 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv544218 | chr20:24733120-24861801 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1062140 | chr20:24807962-25304054 | Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
6 | nsv544219 | chr20:24807962-25304054 | Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
7 | nsv1056345 | chr20:24819570-25168159 | Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:24818600-24823000 | Weak transcription | Fetal Thymus | thymus |
2 | chr20:24818800-24823400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
3 | chr20:24819800-24823000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
4 | chr20:24821400-24823000 | Enhancers | GM12878-XiMat | blood |
5 | chr20:24821400-24823200 | Weak transcription | Fetal Lung | lung |
6 | chr20:24822000-24823600 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
7 | chr20:24822600-24823400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
8 | chr20:24822600-24824400 | Enhancers | Primary hematopoietic stem cells | blood |
9 | chr20:24822800-24823400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
10 | chr20:24822800-24824200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
11 | chr20:24822800-24824200 | Enhancers | Primary B cells from peripheral blood | blood |