Variant report

Variant	rs6106922
Chromosome Location	chr20:24638514-24638515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24637159..24638708-chr20:24641343..24643289,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10439582	1.00[EUR][1000 genomes]
rs11907336	1.00[EUR][1000 genomes]
rs13433097	1.00[EUR][1000 genomes]
rs1883926	1.00[EUR][1000 genomes]
rs6106929	1.00[EUR][1000 genomes]
rs6106932	1.00[EUR][1000 genomes]
rs6106935	1.00[EUR][1000 genomes]
rs6114818	1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[EUR][1000 genomes]
rs6114820	1.00[EUR][1000 genomes]
rs6114823	1.00[EUR][1000 genomes]
rs6114828	1.00[EUR][1000 genomes]
rs6114832	1.00[EUR][1000 genomes]
rs6114833	1.00[EUR][1000 genomes]
rs6114835	1.00[EUR][1000 genomes]
rs6114837	1.00[EUR][1000 genomes]
rs6114839	1.00[EUR][1000 genomes]
rs7273541	1.00[EUR][1000 genomes]
rs7273856	1.00[EUR][1000 genomes]
rs73905429	1.00[EUR][1000 genomes]
rs73905438	1.00[EUR][1000 genomes]
rs73905439	1.00[EUR][1000 genomes]
rs9305139	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24616200-24639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24620000-24641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24629200-24642600	Weak transcription	Right Atrium	heart
4	chr20:24629400-24641000	Weak transcription	Right Ventricle	heart
5	chr20:24630800-24638600	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24631000-24639600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr20:24631000-24639800	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24631200-24639600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr20:24633400-24638600	Weak transcription	Brain Hippocampus Middle	brain
10	chr20:24634600-24648800	Weak transcription	Gastric	stomach
11	chr20:24636600-24639200	Enhancers	Spleen	Spleen
12	chr20:24637200-24639000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr20:24637200-24639800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:24637200-24641200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr20:24637400-24639200	Enhancers	Ovary	ovary
16	chr20:24637400-24640200	Enhancers	Fetal Muscle Leg	muscle
17	chr20:24637600-24638600	Enhancers	Fetal Kidney	kidney
18	chr20:24637600-24638800	Enhancers	Stomach Mucosa	stomach
19	chr20:24637600-24638800	Enhancers	Osteobl	bone
20	chr20:24637600-24639400	Enhancers	NH-A	brain
21	chr20:24637800-24639200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr20:24638000-24638600	Enhancers	A549	lung
23	chr20:24638200-24638600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr20:24638200-24639000	Bivalent Enhancer	Fetal Stomach	stomach
25	chr20:24638400-24640000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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