Variant report

Variant	rs6114828
Chromosome Location	chr20:24673697-24673698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24671407..24673133-chr20:24673157..24675510,2	K562	blood:
2	chr20:24671696..24673797-chr20:24673883..24676356,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10439582	1.00[EUR][1000 genomes]
rs11907336	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433097	1.00[EUR][1000 genomes]
rs1883926	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106922	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs6106929	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106932	1.00[EUR][1000 genomes]
rs6106935	1.00[EUR][1000 genomes]
rs6114818	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6114820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114823	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114832	1.00[EUR][1000 genomes]
rs6114833	1.00[EUR][1000 genomes]
rs6114835	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114837	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114839	1.00[EUR][1000 genomes]
rs7273541	1.00[EUR][1000 genomes]
rs7273856	1.00[EUR][1000 genomes]
rs73905429	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73905438	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73905439	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524920	chr20:24639916-24683554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1061537	chr20:24643869-24683649	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv585744	chr20:24647725-24685440	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24661400-24676000	Weak transcription	Fetal Kidney	kidney
2	chr20:24666600-24684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24672200-24673800	Enhancers	Thymus	Thymus
4	chr20:24672400-24677200	Enhancers	Fetal Thymus	thymus
5	chr20:24672800-24674400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:24673000-24674400	Enhancers	Primary hematopoietic stem cells	blood
7	chr20:24673200-24674200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:24673200-24674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:24673400-24674600	Weak transcription	Spleen	Spleen
10	chr20:24673400-24674800	Enhancers	Left Ventricle	heart
11	chr20:24673600-24673800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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