Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10439582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907336	1.00[EUR][1000 genomes]
rs13433097	1.00[EUR][1000 genomes]
rs1883926	1.00[EUR][1000 genomes]
rs6106922	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs6106929	1.00[EUR][1000 genomes]
rs6106932	1.00[EUR][1000 genomes]
rs6114818	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6114820	1.00[EUR][1000 genomes]
rs6114823	1.00[EUR][1000 genomes]
rs6114828	1.00[EUR][1000 genomes]
rs6114832	1.00[EUR][1000 genomes]
rs6114833	1.00[EUR][1000 genomes]
rs6114835	1.00[EUR][1000 genomes]
rs6114837	1.00[EUR][1000 genomes]
rs6114839	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7273541	1.00[EUR][1000 genomes]
rs7273856	1.00[EUR][1000 genomes]
rs73905429	1.00[EUR][1000 genomes]
rs73905438	1.00[EUR][1000 genomes]
rs73905439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24695400-24708200	Weak transcription	Thymus	Thymus
2	chr20:24700400-24702800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr20:24701000-24704200	Enhancers	Fetal Brain Male	brain
4	chr20:24701200-24702600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr20:24701400-24702000	Enhancers	Fetal Brain Female	brain
6	chr20:24701600-24701800	Enhancers	Fetal Muscle Leg	muscle

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