Variant report

Variant	rs73905429
Chromosome Location	chr20:24652976-24652977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24651840..24653392-chr20:24727209..24728729,2	MCF-7	breast:
2	chr20:24645518..24647041-chr20:24652515..24654778,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10439582	1.00[EUR][1000 genomes]
rs11907336	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13433097	1.00[EUR][1000 genomes]
rs1883926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106922	1.00[EUR][1000 genomes]
rs6106929	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106932	1.00[EUR][1000 genomes]
rs6106935	1.00[EUR][1000 genomes]
rs6114818	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6114820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114828	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114832	1.00[EUR][1000 genomes]
rs6114833	1.00[EUR][1000 genomes]
rs6114835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114839	1.00[EUR][1000 genomes]
rs7273541	1.00[EUR][1000 genomes]
rs7273856	1.00[EUR][1000 genomes]
rs73905438	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73905439	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524920	chr20:24639916-24683554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1061537	chr20:24643869-24683649	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv585744	chr20:24647725-24685440	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24641200-24654000	Weak transcription	Aorta	Aorta
2	chr20:24643400-24661400	Weak transcription	Right Atrium	heart
3	chr20:24645800-24657200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24646400-24657200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr20:24646600-24657400	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24646800-24657200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr20:24646800-24657400	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24647600-24653800	Weak transcription	Brain Hippocampus Middle	brain
9	chr20:24649000-24657200	Weak transcription	Gastric	stomach
10	chr20:24649400-24655600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr20:24650600-24653200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr20:24650600-24655000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr20:24651600-24653800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:24651800-24659000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr20:24652200-24655000	Enhancers	NHLF	lung
16	chr20:24652400-24654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr20:24652400-24654800	Enhancers	HSMM	muscle
18	chr20:24652600-24653200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr20:24652600-24653200	Enhancers	Osteobl	bone
20	chr20:24652600-24653800	Enhancers	NH-A	brain
21	chr20:24652600-24654400	Enhancers	HSMMtube	muscle
22	chr20:24652600-24654800	Enhancers	NHDF-Ad	bronchial
23	chr20:24652800-24653800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr20:24652800-24654600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr20:24652800-24654800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr20:24652800-24655000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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