Variant report

Variant	rs2152533
Chromosome Location	chr10:89890035-89890036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1015953	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1360951	0.80[EUR][1000 genomes]
rs17109095	1.00[JPT][hapmap]
rs17109156	1.00[JPT][hapmap]
rs17109158	1.00[JPT][hapmap]
rs17109310	0.94[ASN][1000 genomes]
rs17322885	0.81[EUR][1000 genomes]
rs17420447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933472	0.81[EUR][1000 genomes]
rs7071618	0.85[ASN][1000 genomes]
rs7095588	0.91[ASN][1000 genomes]
rs7901892	0.80[EUR][1000 genomes]
rs7902285	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895877	chr10:89884031-89905498	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89874000-89891400	Weak transcription	Left Ventricle	heart
2	chr10:89878800-89892200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:89881200-89903800	Weak transcription	Primary B cells from cord blood	blood
5	chr10:89886400-89891400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:89887600-89891400	Weak transcription	Psoas Muscle	Psoas
7	chr10:89888800-89891800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:89889200-89890800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:89889400-89891400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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