Variant report

Variant	rs4933472
Chromosome Location	chr10:89885761-89885762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10788590	1.00[CHB][hapmap]
rs11592115	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360951	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322885	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17420447	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2152533	0.81[EUR][1000 genomes]
rs61854454	1.00[ASN][1000 genomes]
rs7901892	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895877	chr10:89884031-89905498	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4933472	RGR	cis	parietal	SCAN
rs4933472	LRIT2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89874000-89891400	Weak transcription	Left Ventricle	heart
2	chr10:89878800-89892200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:89881200-89885800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:89881200-89886200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:89881200-89903800	Weak transcription	Primary B cells from cord blood	blood
7	chr10:89881600-89886600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:89885600-89886000	Enhancers	Fetal Thymus	thymus
9	chr10:89885600-89886000	Enhancers	Thymus	Thymus
10	chr10:89885600-89886000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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