Variant report

Variant	rs792216
Chromosome Location	chr10:90088377-90088378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509549	1.00[ASN][1000 genomes]
rs10509550	1.00[ASN][1000 genomes]
rs11592115	1.00[ASN][1000 genomes]
rs1169042	1.00[ASN][1000 genomes]
rs11816967	1.00[ASN][1000 genomes]
rs1325901	1.00[ASN][1000 genomes]
rs1360951	1.00[ASN][1000 genomes]
rs1573074	1.00[ASN][1000 genomes]
rs17322885	1.00[ASN][1000 genomes]
rs17334741	1.00[ASN][1000 genomes]
rs17336288	1.00[ASN][1000 genomes]
rs17426488	1.00[ASN][1000 genomes]
rs1774977	1.00[ASN][1000 genomes]
rs2765451	1.00[ASN][1000 genomes]
rs4933472	1.00[ASN][1000 genomes]
rs55713122	1.00[ASN][1000 genomes]
rs57260181	1.00[ASN][1000 genomes]
rs61852496	1.00[ASN][1000 genomes]
rs61854454	1.00[ASN][1000 genomes]
rs7901892	1.00[ASN][1000 genomes]
rs792201	1.00[ASN][1000 genomes]
rs792202	1.00[ASN][1000 genomes]
rs792222	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs792231	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90084600-90103600	Weak transcription	Ovary	ovary
2	chr10:90085000-90091800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:90086600-90091600	Weak transcription	Aorta	Aorta
4	chr10:90087800-90090200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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