Variant report

Variant	rs61854454
Chromosome Location	chr10:89894547-89894548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11592115	1.00[ASN][1000 genomes]
rs1360951	1.00[ASN][1000 genomes]
rs17322885	1.00[ASN][1000 genomes]
rs4933472	1.00[ASN][1000 genomes]
rs7901892	1.00[ASN][1000 genomes]
rs792216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895877	chr10:89884031-89905498	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:89881200-89903800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:89892000-89895000	Weak transcription	Adipose Nuclei	Adipose
4	chr10:89892200-89895200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:89892200-89895400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:89892200-89896200	Weak transcription	Fetal Thymus	thymus
7	chr10:89892200-89896200	Weak transcription	Psoas Muscle	Psoas
8	chr10:89892400-89896200	Weak transcription	Gastric	stomach
9	chr10:89892400-89898000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:89892600-89895800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:89892800-89895400	Weak transcription	Ovary	ovary
12	chr10:89894200-89894600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:89894200-89894600	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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