Variant report

Variant	rs7901892
Chromosome Location	chr10:89893065-89893066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10788590	1.00[CHB][hapmap]
rs11592115	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360951	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17322885	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17420447	0.80[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2152533	0.80[EUR][1000 genomes]
rs4933472	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854454	1.00[ASN][1000 genomes]
rs7902285	0.80[EUR][1000 genomes]
rs792216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895877	chr10:89884031-89905498	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89879200-89896600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:89881200-89903800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:89891800-89893800	Weak transcription	Aorta	Aorta
4	chr10:89891800-89894200	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr10:89892000-89895000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:89892200-89895200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:89892200-89895400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:89892200-89896200	Weak transcription	Fetal Thymus	thymus
9	chr10:89892200-89896200	Weak transcription	Psoas Muscle	Psoas
10	chr10:89892400-89896200	Weak transcription	Gastric	stomach
11	chr10:89892400-89898000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:89892600-89895800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:89892800-89894200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:89892800-89895400	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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