Variant report
| Variant | rs2178372 |
|---|---|
| Chromosome Location | chr6:91801576-91801577 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:91778241..91779921-chr6:91800557..91802726,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1124386 | 1.00[EUR][1000 genomes] |
| rs12661308 | 0.91[EUR][1000 genomes] |
| rs2178373 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28576819 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4377765 | 0.92[EUR][1000 genomes] |
| rs55738043 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57030374 | 0.94[EUR][1000 genomes] |
| rs59057564 | 0.94[EUR][1000 genomes] |
| rs59990943 | 0.92[EUR][1000 genomes] |
| rs62417846 | 1.00[EUR][1000 genomes] |
| rs62417858 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62419963 | 0.94[EUR][1000 genomes] |
| rs6454835 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6917047 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6927217 | 0.97[EUR][1000 genomes] |
| rs6928211 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6928845 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6936521 | 0.95[EUR][1000 genomes] |
| rs7759067 | 0.98[ASN][1000 genomes] |
| rs9345095 | 0.97[EUR][1000 genomes] |
| rs9351251 | 1.00[EUR][1000 genomes] |
| rs9353796 | 0.94[EUR][1000 genomes] |
| rs9359918 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9359923 | 0.97[EUR][1000 genomes] |
| rs9359924 | 0.97[EUR][1000 genomes] |
| rs9362821 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9362822 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9362827 | 0.97[EUR][1000 genomes] |
| rs9362828 | 0.97[EUR][1000 genomes] |
| rs9362832 | 0.97[EUR][1000 genomes] |
| rs9362833 | 0.94[EUR][1000 genomes] |
| rs9444826 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752130 | chr6:91740447-92196479 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830726 | chr6:91750692-91921838 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031681 | chr6:91784557-92075312 | Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538359 | chr6:91784557-92075312 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:91797600-91806600 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr6:91798400-91807200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 3 | chr6:91798600-91806400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
