Variant report

Variant	rs9359918
Chromosome Location	chr6:91799730-91799731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:91793633..91795491-chr6:91798341..91801324,2	K562	blood:
2	chr6:91793724..91795491-chr6:91797204..91799841,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1124386	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12661308	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2178372	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2178373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28576819	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4377765	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55738043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57030374	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59057564	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59990943	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62417846	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62417858	0.97[EUR][1000 genomes]
rs62419963	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6454835	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911612	0.94[ASN][1000 genomes]
rs6917047	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6927217	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6928211	0.92[EUR][1000 genomes]
rs6928845	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6936521	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9342259	0.91[ASN][1000 genomes]
rs9345088	0.87[ASN][1000 genomes]
rs9345090	0.84[ASN][1000 genomes]
rs9345092	0.84[ASN][1000 genomes]
rs9345095	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9351251	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9353789	0.84[ASN][1000 genomes]
rs9353790	0.84[ASN][1000 genomes]
rs9353792	0.84[ASN][1000 genomes]
rs9353796	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9359923	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9359924	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9362821	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9362822	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9362823	0.87[ASN][1000 genomes]
rs9362827	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9362828	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9362832	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9362833	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9444826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3472967	chr6:91798520-91800795	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3472965	chr6:91798689-91800690	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3472966	chr6:91798730-91800673	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3472964	chr6:91798759-91800627	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3472968	chr6:91798759-91800627	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91797600-91806600	Weak transcription	Fetal Stomach	stomach
2	chr6:91798400-91807200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:91798600-91806400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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