Variant report

Variant	rs9362822
Chromosome Location	chr6:91793425-91793426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1124386	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12661308	0.91[EUR][1000 genomes]
rs2178372	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2178373	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28576819	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4377765	0.92[EUR][1000 genomes]
rs55738043	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57030374	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59057564	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59990943	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62417846	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62417858	0.97[EUR][1000 genomes]
rs62419963	0.94[EUR][1000 genomes]
rs6454835	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6911612	0.91[ASN][1000 genomes]
rs6917047	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6927217	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6928211	0.92[EUR][1000 genomes]
rs6928845	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936521	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9342259	0.94[ASN][1000 genomes]
rs9345088	0.98[ASN][1000 genomes]
rs9345090	0.81[ASN][1000 genomes]
rs9345092	0.81[ASN][1000 genomes]
rs9345095	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351251	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9353789	0.81[ASN][1000 genomes]
rs9353790	0.81[ASN][1000 genomes]
rs9353792	0.81[ASN][1000 genomes]
rs9353796	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9359918	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9359923	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9359924	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9362821	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362823	0.98[ASN][1000 genomes]
rs9362827	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9362828	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9362832	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9362833	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9444826	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91791000-91793600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:91791400-91793800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:91791400-91793800	Enhancers	Ovary	ovary
4	chr6:91791600-91793600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:91791600-91793600	Enhancers	HSMM	muscle
6	chr6:91791600-91797600	Weak transcription	Fetal Kidney	kidney
7	chr6:91792000-91793600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:91792000-91793600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:91792200-91793600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:91792200-91793600	Enhancers	HSMMtube	muscle
11	chr6:91792200-91797000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:91792400-91793600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:91792400-91797400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:91792400-91797400	Weak transcription	Fetal Stomach	stomach
15	chr6:91792600-91793600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:91793200-91794400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:91793200-91797400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:91793400-91794200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:91793400-91796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:91793400-91796800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:91793400-91796800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:91793400-91797000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:91793400-91797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:91793400-91797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:91793400-91797400	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:91793400-91797600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:91793400-91797600	Weak transcription	Adipose Nuclei	Adipose

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