Variant report

Variant	rs6928845
Chromosome Location	chr6:91792042-91792043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:91791393..91793294-chr6:91796040..91797967,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1124386	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12661308	0.91[EUR][1000 genomes]
rs2178372	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2178373	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28576819	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4377765	0.92[EUR][1000 genomes]
rs55738043	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57030374	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59057564	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59990943	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62417846	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62417858	0.97[EUR][1000 genomes]
rs62419963	0.94[EUR][1000 genomes]
rs6454835	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6911612	0.91[ASN][1000 genomes]
rs6917047	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6927217	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6928211	0.92[EUR][1000 genomes]
rs6936521	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9342259	0.94[ASN][1000 genomes]
rs9345088	0.98[ASN][1000 genomes]
rs9345090	0.81[ASN][1000 genomes]
rs9345092	0.81[ASN][1000 genomes]
rs9345095	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351251	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9353789	0.81[ASN][1000 genomes]
rs9353790	0.81[ASN][1000 genomes]
rs9353792	0.81[ASN][1000 genomes]
rs9353796	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9359918	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9359923	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9359924	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9362821	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362822	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362823	0.98[ASN][1000 genomes]
rs9362827	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9362828	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9362832	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9362833	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9444826	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91789600-91792400	Enhancers	Fetal Stomach	stomach
2	chr6:91789800-91792400	Enhancers	Brain Germinal Matrix	brain
3	chr6:91789800-91793400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:91790800-91793200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:91791000-91792400	Enhancers	Fetal Brain Male	brain
6	chr6:91791000-91792600	Enhancers	Fetal Intestine Large	intestine
7	chr6:91791000-91793600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:91791200-91792200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:91791200-91792200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:91791200-91792200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:91791200-91792800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:91791200-91793400	Enhancers	Fetal Lung	lung
13	chr6:91791400-91792600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:91791400-91792600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:91791400-91793400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:91791400-91793400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:91791400-91793400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:91791400-91793400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:91791400-91793400	Enhancers	NH-A	brain
20	chr6:91791400-91793800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:91791400-91793800	Enhancers	Ovary	ovary
22	chr6:91791600-91792200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:91791600-91792400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:91791600-91793400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:91791600-91793400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:91791600-91793600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:91791600-91793600	Enhancers	HSMM	muscle
28	chr6:91791600-91797600	Weak transcription	Fetal Kidney	kidney
29	chr6:91791800-91793200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:91792000-91792200	Enhancers	Fetal Intestine Small	intestine
31	chr6:91792000-91792400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:91792000-91792400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:91792000-91792400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:91792000-91792600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:91792000-91792800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:91792000-91793400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:91792000-91793600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:91792000-91793600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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