Variant report

Variant	rs9353790
Chromosome Location	chr6:91806454-91806455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1124386	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16884005	0.90[EUR][1000 genomes]
rs2178373	0.84[ASN][1000 genomes]
rs55738043	0.90[ASN][1000 genomes]
rs57030374	0.83[ASN][1000 genomes]
rs62417846	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62417858	0.87[AFR][1000 genomes]
rs6454835	0.81[ASN][1000 genomes]
rs6928211	0.86[AFR][1000 genomes]
rs6928845	0.81[ASN][1000 genomes]
rs9345090	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9345092	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351251	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9353789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353792	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359918	0.84[ASN][1000 genomes]
rs9359924	0.82[ASN][1000 genomes]
rs9362821	0.81[ASN][1000 genomes]
rs9362822	0.81[ASN][1000 genomes]
rs9362827	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9362832	0.83[ASN][1000 genomes]
rs9444826	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91797600-91806600	Weak transcription	Fetal Stomach	stomach
2	chr6:91798400-91807200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:91804200-91806600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:91805400-91806600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:91806200-91806800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:91806400-91806800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:91806400-91807400	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:91806400-91807600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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