Variant report

Variant	rs2237955
Chromosome Location	chr11:17564486-17564487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17563988..17566643-chr11:17568666..17571231,2	MCF-7	breast:
2	chr11:17550003..17552043-chr11:17563166..17565257,2	K562	blood:

Variant related genes	Relation type
ENSG00000188162	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10741729	0.92[ASN][1000 genomes]
rs1859819	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2108333	0.88[ASN][1000 genomes]
rs2237956	0.80[ASN][1000 genomes]
rs2237958	0.98[ASN][1000 genomes]
rs2237959	0.82[ASN][1000 genomes]
rs2883581	0.96[ASN][1000 genomes]
rs4757540	0.98[ASN][1000 genomes]
rs7102246	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106302	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111978	0.90[ASN][1000 genomes]
rs7113935	0.98[ASN][1000 genomes]
rs7116086	0.85[ASN][1000 genomes]
rs7125811	0.91[ASN][1000 genomes]
rs7933452	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972676	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv553586	chr11:17559018-17599093	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17562000-17565200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17562400-17566200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr11:17562600-17565000	Enhancers	A549	lung
4	chr11:17563200-17565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:17563200-17566200	Active TSS	Rectal Smooth Muscle	rectum
6	chr11:17563400-17564600	Enhancers	Hela-S3	cervix
7	chr11:17563400-17565200	Enhancers	Pancreas	Pancrea
8	chr11:17563600-17565000	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr11:17563600-17566400	Active TSS	Duodenum Mucosa	Duodenum
10	chr11:17563800-17564800	Active TSS	Fetal Intestine Large	intestine
11	chr11:17563800-17566400	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr11:17564000-17565200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr11:17564000-17565400	Active TSS	Colonic Mucosa	Colon
14	chr11:17564000-17566000	Active TSS	Fetal Kidney	kidney
15	chr11:17564000-17566200	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr11:17564200-17565000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr11:17564200-17565000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
18	chr11:17564200-17565000	Enhancers	HepG2	liver
19	chr11:17564200-17565200	Active TSS	Stomach Mucosa	stomach
20	chr11:17564200-17565400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:17564200-17565400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:17564200-17566000	Bivalent/Poised TSS	Fetal Stomach	stomach
23	chr11:17564400-17564600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
24	chr11:17564400-17564600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:17564400-17564600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr11:17564400-17564600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr11:17564400-17564600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:17564400-17564600	Enhancers	Fetal Brain Female	brain
29	chr11:17564400-17566000	Active TSS	Gastric	stomach

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