Variant report

Variant	rs7106302
Chromosome Location	chr11:17563489-17563490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17557311..17560136-chr11:17561870..17563782,2	K562	blood:
2	chr11:17550003..17552043-chr11:17563166..17565257,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741729	0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs1859819	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2073582	0.89[CEU][hapmap];0.83[MEX][hapmap]
rs2108333	0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2237955	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237956	0.87[CHB][hapmap];0.87[CHD][hapmap];0.80[ASN][1000 genomes]
rs2237957	0.82[CHB][hapmap];0.87[CHD][hapmap]
rs2237958	0.85[CEU][hapmap];0.98[ASN][1000 genomes]
rs2237959	0.82[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs2240489	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2883581	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs4756898	0.89[JPT][hapmap]
rs4757540	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7102246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111978	0.90[ASN][1000 genomes]
rs7113935	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7116086	0.85[ASN][1000 genomes]
rs7119071	0.82[CEU][hapmap]
rs7125811	0.91[ASN][1000 genomes]
rs7933452	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972676	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv553586	chr11:17559018-17599093	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106302	C11orf58	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17562000-17564000	Enhancers	Stomach Mucosa	stomach
2	chr11:17562000-17565200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:17562200-17564400	Weak transcription	Gastric	stomach
4	chr11:17562400-17564400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:17562400-17566200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr11:17562600-17565000	Enhancers	A549	lung
7	chr11:17562800-17563600	Enhancers	HepG2	liver
8	chr11:17563000-17563800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr11:17563000-17564000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr11:17563200-17563600	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr11:17563200-17563800	Enhancers	Colonic Mucosa	Colon
12	chr11:17563200-17563800	Flanking Active TSS	Fetal Intestine Large	intestine
13	chr11:17563200-17564400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:17563200-17565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:17563200-17566200	Active TSS	Rectal Smooth Muscle	rectum
16	chr11:17563400-17563600	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr11:17563400-17564600	Enhancers	Hela-S3	cervix
18	chr11:17563400-17565200	Enhancers	Pancreas	Pancrea

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