Variant report

Variant	rs7111978
Chromosome Location	chr11:17561896-17561897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10741729	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766409	0.83[AFR][1000 genomes]
rs1859819	0.86[ASN][1000 genomes]
rs2041027	0.91[AFR][1000 genomes]
rs2237955	0.90[ASN][1000 genomes]
rs2237956	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237957	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2237958	0.88[ASN][1000 genomes]
rs2237959	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2883581	0.86[ASN][1000 genomes]
rs4757540	0.88[ASN][1000 genomes]
rs6486379	0.89[AFR][1000 genomes]
rs7102246	0.90[ASN][1000 genomes]
rs7106302	0.90[ASN][1000 genomes]
rs7113935	0.88[ASN][1000 genomes]
rs7125811	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933452	0.90[ASN][1000 genomes]
rs878547	0.85[AFR][1000 genomes]
rs972676	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv553586	chr11:17559018-17599093	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17538400-17562200	Weak transcription	Small Intestine	intestine
2	chr11:17547200-17563200	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:17553600-17562200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:17553800-17563200	Weak transcription	Colonic Mucosa	Colon
5	chr11:17555800-17562400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:17558000-17563400	Weak transcription	Hela-S3	cervix
7	chr11:17558400-17563200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:17558800-17562200	Genic enhancers	Fetal Intestine Large	intestine
9	chr11:17559800-17562000	Weak transcription	Stomach Mucosa	stomach
10	chr11:17560200-17562200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:17560400-17562600	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:17560800-17562000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:17561800-17562200	Enhancers	Gastric	stomach
14	chr11:17561800-17562800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr11:17561800-17563000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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