Variant report

Variant	rs2275754
Chromosome Location	chr6:16059935-16059936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16058126..16062420-chr6:16127519..16131230,6	K562	blood:
2	chr6:16056295..16058195-chr6:16059927..16062680,3	K562	blood:
3	chr6:16052571..16055224-chr6:16057956..16060128,2	MCF-7	breast:
4	chr6:16058713..16061544-chr6:16062055..16064274,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10949337	1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12663816	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2275755	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818972	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57455393	1.00[EUR][1000 genomes]
rs7754634	0.87[YRI][hapmap]
rs7772725	0.82[ASW][hapmap]
rs9349992	1.00[CHB][hapmap];0.88[GIH][hapmap]
rs9349993	0.92[CHB][hapmap]
rs9349994	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9358077	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9358078	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9358079	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367889	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.82[ASN][1000 genomes]
rs9370857	1.00[CHB][hapmap]
rs9370858	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9370859	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9370860	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];0.86[ASN][1000 genomes]
rs9370861	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9383100	1.00[CHB][hapmap]
rs9383101	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9383102	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9383103	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383104	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383105	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383106	0.91[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383107	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9383108	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383109	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396634	0.82[ASN][1000 genomes]
rs9396635	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9396636	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9396637	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9396638	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9396640	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16055600-16060600	Enhancers	Fetal Brain Male	brain
2	chr6:16057400-16060600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:16057400-16060800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:16057600-16060000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:16057600-16060400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:16057600-16060600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:16057600-16060800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:16057600-16061000	Enhancers	K562	blood
9	chr6:16057800-16060000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:16057800-16060200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:16057800-16060600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:16058200-16060200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:16058400-16060400	Enhancers	Colon Smooth Muscle	Colon
14	chr6:16058400-16060400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:16058400-16061000	Enhancers	Fetal Muscle Leg	muscle
16	chr6:16058400-16062000	Weak transcription	NHEK	skin
17	chr6:16058400-16065000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:16058600-16060400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:16059000-16060000	Weak transcription	Psoas Muscle	Psoas
20	chr6:16059000-16060400	Weak transcription	Left Ventricle	heart
21	chr6:16059200-16060200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:16059200-16082600	Weak transcription	Right Atrium	heart
23	chr6:16059400-16060400	Enhancers	Fetal Brain Female	brain
24	chr6:16059600-16064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:16059800-16060000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:16059800-16060200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr6:16059800-16060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:16059800-16060600	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:16059800-16060800	Enhancers	Spleen	Spleen

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