Variant report

Variant	rs9383100
Chromosome Location	chr6:16027125-16027126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16026358..16029621-chr6:16030628..16033176,4	K562	blood:
2	chr6:16022979..16024566-chr6:16026759..16029167,2	K562	blood:
3	chr6:16022951..16024907-chr6:16026876..16029109,2	K562	blood:
4	chr6:16025414..16029753-chr6:16128326..16131015,4	K562	blood:
5	chr6:16006719..16008758-chr6:16026173..16028260,2	K562	blood:
6	chr6:16020382..16022271-chr6:16026878..16029319,2	K562	blood:
7	chr6:16026358..16028275-chr6:16129311..16130971,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10949337	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12663816	0.91[CHB][hapmap]
rs2275754	1.00[CHB][hapmap]
rs2275755	0.83[CHB][hapmap]
rs57441444	1.00[ASN][1000 genomes]
rs57455393	1.00[ASN][1000 genomes]
rs58013991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349993	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs9349994	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9358076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358077	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9358078	0.86[CHB][hapmap]
rs9367889	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9370857	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9370859	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9370860	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9370861	0.92[CHB][hapmap]
rs9383101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9383102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9383103	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9383104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9383105	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9383106	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9383107	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs9383108	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9396635	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9396637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9396638	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462642	chr6:16019115-16056026	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv601007	chr6:16019115-16056026	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16020800-16029400	Weak transcription	K562	blood

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