Variant report

Variant	rs9349993
Chromosome Location	chr6:16033065-16033066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16029934..16037456-chr6:16127921..16130807,9	K562	blood:
2	chr6:16026358..16029621-chr6:16030628..16033176,4	K562	blood:
3	chr6:16031540..16033929-chr6:16034030..16038296,6	K562	blood:
4	chr6:16031294..16033110-chr6:16127480..16129876,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10949337	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12663816	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs2275754	0.92[CHB][hapmap]
rs2275755	0.83[CHB][hapmap]
rs57441444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57455393	1.00[ASN][1000 genomes]
rs58013991	1.00[ASN][1000 genomes]
rs9349992	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9349994	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9358076	1.00[ASN][1000 genomes]
rs9358077	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9358078	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9367889	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9370857	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs9370858	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9370859	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9370860	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs9370861	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs9383100	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs9383101	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9383102	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9383103	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9383104	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9383105	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9383106	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9383107	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9383108	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9396635	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9396637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9396638	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462642	chr6:16019115-16056026	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv601007	chr6:16019115-16056026	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16032800-16034000	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:16033000-16033200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:16033000-16034200	Enhancers	K562	blood

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