Variant report

Variant	rs12663816
Chromosome Location	chr6:16054989-16054990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16053561..16056150-chr6:16129358..16130868,2	K562	blood:
2	chr6:15697857..15699700-chr6:16052665..16055384,2	K562	blood:
3	chr6:16052571..16055224-chr6:16057956..16060128,2	MCF-7	breast:
4	chr6:16051800..16056150-chr6:16128493..16131846,4	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10949337	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275754	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2275755	0.91[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3818972	0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57455393	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9349992	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs9349993	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs9349994	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358076	1.00[AFR][1000 genomes]
rs9358077	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358078	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358079	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367889	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9370857	0.91[CHB][hapmap]
rs9370858	0.91[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9370859	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9370860	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9370861	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9383100	0.91[CHB][hapmap]
rs9383101	0.90[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9383102	0.91[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9383103	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383104	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383105	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383106	0.90[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383107	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383108	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396634	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9396635	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396636	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396637	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396638	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396640	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462642	chr6:16019115-16056026	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv601007	chr6:16019115-16056026	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16044600-16058800	Weak transcription	Right Atrium	heart
2	chr6:16052000-16056000	Weak transcription	K562	blood

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