Variant report

Variant	rs9358077
Chromosome Location	chr6:16043938-16043939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16041790..16045319-chr6:16127001..16129642,4	K562	blood:
2	chr6:16042692..16045319-chr6:16127001..16130025,3	K562	blood:
3	chr6:16041208..16045592-chr6:16048411..16051346,3	K562	blood:
4	chr6:16042797..16045111-chr6:16140994..16143174,2	K562	blood:

Variant related genes	Relation type
ENSG00000263712	Chromatin interaction
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10949337	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12660370	0.82[JPT][hapmap]
rs12663816	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665492	0.82[JPT][hapmap]
rs2275754	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2275755	0.88[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3818972	1.00[EUR][1000 genomes]
rs57455393	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6925493	0.82[JPT][hapmap]
rs9349992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs9349993	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9349994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9358076	1.00[AFR][1000 genomes]
rs9358078	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358079	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367889	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9370857	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9370858	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9370859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9370860	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9370861	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9383100	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9383101	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9383102	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9383103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383104	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383105	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383106	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383107	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383108	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9383109	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396634	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9396635	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396636	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396640	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462642	chr6:16019115-16056026	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv601007	chr6:16019115-16056026	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16042800-16044000	Weak transcription	Right Atrium	heart
2	chr6:16043400-16044000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:16043400-16044200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:16043400-16044400	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:16043400-16044600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:16043400-16044800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:16043400-16044800	Enhancers	Adipose Nuclei	Adipose
8	chr6:16043400-16044800	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:16043600-16044000	Enhancers	Brain Angular Gyrus	brain
10	chr6:16043600-16044000	Enhancers	K562	blood
11	chr6:16043600-16044200	Enhancers	Brain Anterior Caudate	brain
12	chr6:16043600-16044400	Enhancers	Brain Hippocampus Middle	brain
13	chr6:16043600-16044400	Enhancers	Brain Substantia Nigra	brain
14	chr6:16043600-16044600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:16043600-16044600	Enhancers	Stomach Mucosa	stomach
16	chr6:16043600-16045200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:16043800-16044400	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:16043800-16044600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:16043800-16044600	Enhancers	Psoas Muscle	Psoas

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