Variant report

Variant	rs2277535
Chromosome Location	chr15:42119711-42119712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:74)
CpG islands
(count:61)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:74 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:42119619-42120981	U87	brain:	n/a	n/a
2	MTA3	chr15:42119349-42121169	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:42119620-42121274	HepG2	liver:	n/a	n/a
4	POLR2A	chr15:42119525-42120766	SK-N-SH	brain:	n/a	n/a
5	EGR1	chr15:42119496-42119872	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr15:42119509-42120712	HUVEC	blood vessel:	n/a	n/a
7	MXI1	chr15:42119659-42119834	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr15:42119614-42121141	NB4	blood:	n/a	chr15:42120711-42120720
9	POLR2A	chr15:42119363-42120867	PANC-1	pancreas:	n/a	n/a
10	BACH1	chr15:42119616-42119901	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr15:42119552-42120595	GM19193	blood:	n/a	n/a
12	FOSL2	chr15:42119479-42120680	HepG2	liver:	n/a	n/a
13	ZBTB7A	chr15:42119447-42120814	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr15:42119602-42120607	GM12891	blood:	n/a	n/a
15	MAZ	chr15:42119705-42120833	K562	blood:	n/a	chr15:42120711-42120720
16	SIN3A	chr15:42119499-42120903	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr15:42119707-42120878	PFSK-1	brain:	n/a	n/a
18	POLR2A	chr15:42119647-42120882	U87	brain:	n/a	n/a
19	POLR2A	chr15:42119524-42120788	GM12878	blood:	n/a	n/a
20	HMGN3	chr15:42119568-42120731	K562	blood:	n/a	n/a
21	POLR2A	chr15:42119453-42121180	HUVEC	blood vessel:	n/a	n/a
22	MYC	chr15:42119644-42119743	MCF-7	breast:	n/a	n/a
23	MAX	chr15:42119449-42120183	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr15:42119692-42120676	GM18505	blood:	n/a	n/a
25	MAX	chr15:42119385-42120821	ECC-1	luminal epithelium:	n/a	chr15:42120711-42120720
26	TAF1	chr15:42119541-42120760	ECC-1	luminal epithelium:	n/a	n/a
27	MAX	chr15:42119414-42120946	ECC-1	luminal epithelium:	n/a	chr15:42120711-42120720
28	POLR2A	chr15:42119550-42120948	K562	blood:	n/a	n/a
29	EBF1	chr15:42119540-42119777	GM12878	blood:	n/a	n/a
30	CTCF	chr15:42119680-42119830	GM12868	blood:	n/a	n/a
31	PML	chr15:42119550-42120699	GM12878	blood:	n/a	n/a
32	CCNT2	chr15:42119621-42120692	K562	blood:	n/a	n/a
33	STAT5A	chr15:42119566-42119782	GM12878	blood:	n/a	n/a
34	CHD1	chr15:42119440-42121272	IMR90	lung:	n/a	n/a
35	POLR2A	chr15:42119506-42119877	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr15:42118747-42121099	PANC-1	pancreas:	n/a	n/a
37	MXI1	chr15:42119453-42121231	IMR90	lung:	n/a	n/a
38	POLR2A	chr15:42119423-42119938	GM12892	blood:	n/a	n/a
39	POLR2A	chr15:42119633-42120787	Hela-S3	cervix:	n/a	n/a
40	RUNX3	chr15:42119545-42120882	GM12878	blood:	n/a	n/a
41	POLR2A	chr15:42119552-42120806	Raji	blood:	n/a	n/a
42	POLR2A	chr15:42119456-42120795	H1-hESC	embryonic stem cell:	n/a	n/a
43	TEAD4	chr15:42119444-42120827	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr15:42119550-42120872	K562	blood:	n/a	chr15:42120711-42120720
45	POLR2A	chr15:42119462-42120817	ECC-1	luminal epithelium:	n/a	n/a
46	POLR2A	chr15:42119686-42119865	H1-hESC	embryonic stem cell:	n/a	n/a
47	BCL3	chr15:42119375-42120626	GM12878	blood:	n/a	n/a
48	POLR2A	chr15:42119628-42120667	GM18951	blood:	n/a	n/a
49	POLR2A	chr15:42119486-42120814	HUVEC	blood vessel:	n/a	n/a
50	STAT5A	chr15:42119463-42120832	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:42119684-42119734	AG10803	skin:	n/a
2	chr15:42119684-42119734	HRPEpiC	eye:	n/a
3	chr15:42119684-42119734	NHDF-neo	bronchial:	n/a
4	chr15:42119684-42119734	BJ	skin:	n/a
5	chr15:42119684-42119734	GM12892	blood:	n/a
6	chr15:42119684-42119734	HCF	heart:	n/a
7	chr15:42119684-42119734	HIPEpiC	eye:	n/a
8	chr15:42119684-42119734	SK-N-MC	brain:	n/a
9	chr15:42119684-42119734	AG04449	skin:	fetal
10	chr15:42119684-42119734	AG04450	lung:	fetal
11	chr15:42119684-42119734	Hela-S3	cervix:	n/a
12	chr15:42119684-42119734	AG09309	skin:	n/a
13	chr15:42119684-42119734	Caco-2	colon:	n/a
14	chr15:42119684-42119734	GM19239	blood:	n/a
15	chr15:42119684-42119734	U87	brain:	n/a
16	chr15:42119684-42119734	A549	lung:	n/a
17	chr15:42119684-42119734	SK-N-SH_RA	brain:	n/a
18	chr15:42119684-42119734	CMK	blood:	n/a
19	chr15:42119684-42119734	HepG2	liver:	n/a
20	chr15:42119684-42119734	MCF10A-Er-Src	breast:	n/a
21	chr15:42119684-42119734	HCT-116	colon:	n/a
22	chr15:42119684-42119734	K562	blood:	n/a
23	chr15:42119684-42119734	PrEC	prostate:	n/a
24	chr15:42119684-42119734	ProgFib	skin:	n/a
25	chr15:42119684-42119734	HUVEC	blood vessel:	n/a
26	chr15:42119684-42119734	ovcar-3	ovarian:	n/a
27	chr15:42119684-42119734	GM06990	blood:	n/a
28	chr15:42119684-42119734	HL-60	blood:	n/a
29	chr15:42119684-42119734	GM12878	blood:	n/a
30	chr15:42119684-42119734	SAEC	small airway:	n/a
31	chr15:42119684-42119734	HAEpiC	amniotic membrane:	n/a
32	chr15:42119684-42119734	NHBE	bronchial:	n/a
33	chr15:42119684-42119734	AG09319	gingival:	n/a
34	chr15:42119684-42119734	BE2_C	brain:	n/a
35	chr15:42119684-42119734	H1-hESC	embryonic stem cell:	embryo
36	chr15:42119684-42119734	T-47D	breast:	n/a
37	chr15:42119684-42119734	PFSK-1	brain:	n/a
38	chr15:42119684-42119734	IMR90	lung:	fetal
39	chr15:42119684-42119734	PANC-1	pancreas:	n/a
40	chr15:42119684-42119734	LNCaP	prostate:	n/a
41	chr15:42119684-42119734	NT2-D1	testis:	n/a
42	chr15:42119684-42119734	RPTEC	kidney:	n/a
43	chr15:42119684-42119734	SK-N-SH	brain:	n/a
44	chr15:42119684-42119734	NB4	blood:	n/a
45	chr15:42119684-42119734	SKMC	muscle:	n/a
46	chr15:42119684-42119734	Jurkat	blood:	n/a
47	chr15:42119684-42119734	HCM	heart:	n/a
48	chr15:42119684-42119734	MCF-7	breast:	n/a
49	chr15:42119684-42119734	Hepatocyte	liver:	n/a
50	chr15:42119684-42119734	ECC-1	luminal epithelium:	n/a

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42106183..42109859-chr15:42118195..42121802,3	K562	blood:
2	chr15:42119169..42123691-chr15:42124459..42130624,7	MCF-7	breast:
3	chr15:42065876..42068807-chr15:42118615..42122663,5	K562	blood:
4	chr15:42119559..42121524-chr15:42137744..42139506,3	K562	blood:
5	chr15:42119641..42122495-chr15:42123255..42125312,3	K562	blood:
6	chr15:42102419..42105107-chr15:42118936..42121739,2	MCF-7	breast:
7	chr15:42114563..42118600-chr15:42118704..42121383,3	K562	blood:
8	chr15:42119185..42121349-chr15:42128797..42131937,4	MCF-7	breast:
9	chr15:42119178..42121855-chr15:42127765..42129934,4	K562	blood:
10	chr15:41835700..41837704-chr15:42118864..42120391,2	K562	blood:

No data

Variant related genes	Relation type
JMJD7	TF binding region
JMJD7-PLA2G4B	TF binding region
PLA2G4B	TF binding region
JMJD7	CpG island
JMJD7-PLA2G4B	CpG island
PLA2G4B	CpG island
ENSG00000103932	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000243789	Chromatin interaction
ENSG00000168970	Chromatin interaction
ENSG00000243708	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1105881	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs1107858	0.92[CEU][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs11632424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11634956	0.86[JPT][hapmap]
rs11635067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635415	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12440747	0.96[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12441300	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1531140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16971976	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs17677199	0.96[CEU][hapmap];0.92[JPT][hapmap]
rs17677991	0.96[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17678138	0.96[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17678552	0.96[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17678767	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17734856	0.92[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1918310	0.92[CEU][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2241522	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2278964	1.00[ASW][hapmap]
rs2303516	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303518	0.96[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305654	0.92[CEU][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2412641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577960	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28373318	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28401754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28432037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28451764	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28680296	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701757	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28754734	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3179542	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3743024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3959569	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4923910	0.85[ASN][1000 genomes]
rs4923914	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923919	0.82[YRI][hapmap]
rs4924570	1.00[ASW][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs4924575	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4924576	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4924580	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62002090	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62002091	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8025714	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8035855	0.85[JPT][hapmap]
rs890498	0.83[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs890505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9920903	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904114	chr15:42050390-42119900	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv904115	chr15:42076387-42171483	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1038393	chr15:42083574-42188035	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
9	esv1827003	chr15:42087505-42199076	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
10	esv1816120	chr15:42093384-42171578	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1041645	chr15:42095168-42186482	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1051200	chr15:42095168-42188035	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
13	nsv517631	chr15:42096926-42187492	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1051733	chr15:42098896-42186482	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
15	nsv1036153	chr15:42098896-42188035	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1048606	chr15:42101694-42192760	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
18	nsv904117	chr15:42103822-42184794	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
19	nsv904118	chr15:42103822-42207905	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
20	nsv904119	chr15:42109975-42142912	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv904120	chr15:42109975-42153085	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv904121	chr15:42109975-42162957	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
23	nsv904122	chr15:42109975-42166475	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
24	nsv904123	chr15:42109975-42171483	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
25	nsv904124	chr15:42109975-42207905	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
26	nsv9244	chr15:42110712-42208805	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2277535	RPAP1	cis	parietal	SCAN
rs2277535	JMJD7-PLA2G4B	cis	parietal	SCAN
rs2277535	JMJD7-PLA2G4B	cis	cerebellum	SCAN
rs2277535	SPTBN5	cis	cerebellum	SCAN
rs2277535	NDUFAF1	cis	parietal	SCAN
rs2277535	MAPKBP1	cis	cerebellum	SCAN
rs2277535	MGA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42117000-42120200	Enhancers	Fetal Heart	heart
2	chr15:42119400-42119800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr15:42119400-42119800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr15:42119400-42119800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:42119400-42119800	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr15:42119400-42119800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr15:42119400-42120000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr15:42119400-42120000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr15:42119400-42120000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:42119400-42120000	Flanking Active TSS	Dnd41	blood
11	chr15:42119400-42120200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr15:42119400-42120200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:42119400-42120600	Active TSS	Primary T cells from cord blood	blood
14	chr15:42119400-42120800	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr15:42119400-42120800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr15:42119400-42120800	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr15:42119400-42120800	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr15:42119400-42120800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr15:42119400-42120800	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr15:42119400-42120800	Active TSS	Rectal Smooth Muscle	rectum
21	chr15:42119400-42121000	Active TSS	H1 Cell Line	embryonic stem cell
22	chr15:42119400-42121000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr15:42119400-42121000	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr15:42119400-42121000	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr15:42119400-42121000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:42119400-42121000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:42119400-42121200	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr15:42119400-42121200	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr15:42119400-42121200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:42119400-42121200	Active TSS	Thymus	Thymus
31	chr15:42119600-42119800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:42119600-42119800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:42119600-42119800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:42119600-42119800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:42119600-42119800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr15:42119600-42119800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:42119600-42119800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:42119600-42119800	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr15:42119600-42119800	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr15:42119600-42119800	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr15:42119600-42119800	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr15:42119600-42119800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr15:42119600-42119800	Flanking Active TSS	Esophagus	oesophagus
44	chr15:42119600-42119800	Enhancers	Fetal Brain Male	brain
45	chr15:42119600-42119800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
46	chr15:42119600-42119800	Flanking Active TSS	Fetal Lung	lung
47	chr15:42119600-42119800	Flanking Active TSS	Fetal Stomach	stomach
48	chr15:42119600-42119800	Enhancers	Gastric	stomach
49	chr15:42119600-42119800	Flanking Active TSS	Left Ventricle	heart
50	chr15:42119600-42119800	Enhancers	Lung	lung

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