Variant report

Variant	rs4924576
Chromosome Location	chr15:42119593-42119594
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:55)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:55 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr15:42119349-42121169	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:42119525-42120766	SK-N-SH	brain:	n/a	n/a
3	EGR1	chr15:42119496-42119872	ECC-1	luminal epithelium:	n/a	n/a
4	POLR2A	chr15:42119509-42120712	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr15:42119363-42120867	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr15:42119552-42120595	GM19193	blood:	n/a	n/a
7	FOSL2	chr15:42119479-42120680	HepG2	liver:	n/a	n/a
8	ZBTB7A	chr15:42119447-42120814	ECC-1	luminal epithelium:	n/a	n/a
9	SIN3A	chr15:42119499-42120903	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr15:42119524-42120788	GM12878	blood:	n/a	n/a
11	HMGN3	chr15:42119568-42120731	K562	blood:	n/a	n/a
12	POLR2A	chr15:42119453-42121180	HUVEC	blood vessel:	n/a	n/a
13	MAX	chr15:42119449-42120183	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAX	chr15:42119385-42120821	ECC-1	luminal epithelium:	n/a	chr15:42120711-42120720
15	CTCF	chr15:42119540-42119690	NHEK	skin:	n/a	n/a
16	TAF1	chr15:42119541-42120760	ECC-1	luminal epithelium:	n/a	n/a
17	MAX	chr15:42119414-42120946	ECC-1	luminal epithelium:	n/a	chr15:42120711-42120720
18	POLR2A	chr15:42119550-42120948	K562	blood:	n/a	n/a
19	EBF1	chr15:42119540-42119777	GM12878	blood:	n/a	n/a
20	PML	chr15:42119550-42120699	GM12878	blood:	n/a	n/a
21	STAT5A	chr15:42119566-42119782	GM12878	blood:	n/a	n/a
22	CHD1	chr15:42119440-42121272	IMR90	lung:	n/a	n/a
23	POLR2A	chr15:42119506-42119877	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr15:42118747-42121099	PANC-1	pancreas:	n/a	n/a
25	CTCF	chr15:42119520-42119670	GM12870	blood:	n/a	n/a
26	MXI1	chr15:42119453-42121231	IMR90	lung:	n/a	n/a
27	POLR2A	chr15:42119423-42119938	GM12892	blood:	n/a	n/a
28	POLR2A	chr15:42119591-42119593	Hela-S3	cervix:	n/a	n/a
29	RUNX3	chr15:42119545-42120882	GM12878	blood:	n/a	n/a
30	POLR2A	chr15:42119552-42120806	Raji	blood:	n/a	n/a
31	POLR2A	chr15:42119456-42120795	H1-hESC	embryonic stem cell:	n/a	n/a
32	TEAD4	chr15:42119444-42120827	ECC-1	luminal epithelium:	n/a	n/a
33	MAX	chr15:42119550-42120872	K562	blood:	n/a	chr15:42120711-42120720
34	POLR2A	chr15:42119462-42120817	ECC-1	luminal epithelium:	n/a	n/a
35	BCL3	chr15:42119375-42120626	GM12878	blood:	n/a	n/a
36	POLR2A	chr15:42119486-42120814	HUVEC	blood vessel:	n/a	n/a
37	STAT5A	chr15:42119463-42120832	GM12878	blood:	n/a	n/a
38	POLR2A	chr15:42119579-42120745	GM15510	blood:	n/a	n/a
39	POLR2A	chr15:42119513-42119796	GM12878	blood:	n/a	n/a
40	EP300	chr15:42119362-42120716	ECC-1	luminal epithelium:	n/a	chr15:42120445-42120461
41	POLR2A	chr15:42119480-42120798	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr15:42119563-42120803	ECC-1	luminal epithelium:	n/a	n/a
43	TCF12	chr15:42119360-42120886	ECC-1	luminal epithelium:	n/a	chr15:42120521-42120531
44	EGR1	chr15:42119497-42119852	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr15:42119593-42119609	HepG2	liver:	n/a	n/a
46	POLR2A	chr15:42119516-42119885	GM12878	blood:	n/a	n/a
47	ZBTB7A	chr15:42119466-42120228	ECC-1	luminal epithelium:	n/a	n/a
48	NFIC	chr15:42119415-42120244	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr15:42119409-42120975	K562	blood:	n/a	n/a
50	TEAD4	chr15:42119458-42120936	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42106183..42109859-chr15:42118195..42121802,3	K562	blood:
2	chr15:42119169..42123691-chr15:42124459..42130624,7	MCF-7	breast:
3	chr15:42065876..42068807-chr15:42118615..42122663,5	K562	blood:
4	chr15:42119559..42121524-chr15:42137744..42139506,3	K562	blood:
5	chr15:42102419..42105107-chr15:42118936..42121739,2	MCF-7	breast:
6	chr15:42114563..42118600-chr15:42118704..42121383,3	K562	blood:
7	chr15:42119185..42121349-chr15:42128797..42131937,4	MCF-7	breast:
8	chr15:42119178..42121855-chr15:42127765..42129934,4	K562	blood:
9	chr15:41835700..41837704-chr15:42118864..42120391,2	K562	blood:

No data

Variant related genes	Relation type
JMJD7-PLA2G4B	TF binding region
JMJD7	TF binding region
PLA2G4B	TF binding region
ENSG00000243708	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000243789	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000168970	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1105881	0.88[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs1107858	0.92[CEU][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs11632424	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11634956	0.86[JPT][hapmap]
rs11635067	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11635415	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12440747	0.96[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12441300	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1531140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16971976	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs17677199	0.96[CEU][hapmap];0.92[JPT][hapmap]
rs17677991	0.96[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17678138	0.96[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17678552	0.96[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17678767	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17734856	0.92[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1918310	0.92[CEU][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2241522	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2277535	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2278964	1.00[ASW][hapmap]
rs2303516	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2303518	0.96[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2305654	0.92[CEU][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2412641	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2577960	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28373318	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28401754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28432037	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28451764	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28680296	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28701757	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28754734	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3179542	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3743024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3959569	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4923910	0.82[ASN][1000 genomes]
rs4923914	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923919	0.82[YRI][hapmap]
rs4924570	1.00[ASW][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs4924575	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4924580	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62002090	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62002091	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8025714	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035855	0.85[JPT][hapmap]
rs890498	0.83[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs890505	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9920903	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904114	chr15:42050390-42119900	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv904115	chr15:42076387-42171483	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1038393	chr15:42083574-42188035	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
9	esv1827003	chr15:42087505-42199076	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
10	esv1816120	chr15:42093384-42171578	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1041645	chr15:42095168-42186482	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1051200	chr15:42095168-42188035	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
13	nsv517631	chr15:42096926-42187492	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1051733	chr15:42098896-42186482	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
15	nsv1036153	chr15:42098896-42188035	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1048606	chr15:42101694-42192760	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
18	nsv904117	chr15:42103822-42184794	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
19	nsv904118	chr15:42103822-42207905	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
20	nsv904119	chr15:42109975-42142912	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv904120	chr15:42109975-42153085	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv904121	chr15:42109975-42162957	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
23	nsv904122	chr15:42109975-42166475	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
24	nsv904123	chr15:42109975-42171483	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
25	nsv904124	chr15:42109975-42207905	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
26	nsv9244	chr15:42110712-42208805	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4924576	JMJD7-PLA2G4B	cis	cerebellum	SCAN
rs4924576	NDUFAF1	cis	parietal	SCAN
rs4924576	MAPKBP1	cis	cerebellum	SCAN
rs4924576	JMJD7-PLA2G4B	cis	parietal	SCAN
rs4924576	SPTBN5	cis	cerebellum	SCAN
rs4924576	RPAP1	cis	parietal	SCAN
rs4924576	MGA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42097800-42119600	Weak transcription	Psoas Muscle	Psoas
2	chr15:42101800-42119600	Weak transcription	Hela-S3	cervix
3	chr15:42104200-42119600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:42104200-42119600	Weak transcription	K562	blood
5	chr15:42109400-42119600	Weak transcription	Right Atrium	heart
6	chr15:42110400-42119600	Weak transcription	Small Intestine	intestine
7	chr15:42111000-42119600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:42111000-42119600	Weak transcription	Fetal Brain Male	brain
9	chr15:42111200-42119600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:42111200-42119600	Weak transcription	Fetal Kidney	kidney
11	chr15:42111400-42119600	Weak transcription	HepG2	liver
12	chr15:42112200-42119600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:42113000-42119600	Weak transcription	Fetal Lung	lung
14	chr15:42113600-42119600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:42113600-42119600	Weak transcription	HUVEC	blood vessel
16	chr15:42114000-42119600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:42114000-42119600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:42114200-42119600	Weak transcription	Stomach Mucosa	stomach
19	chr15:42115600-42119600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:42115600-42119600	Weak transcription	HSMM	muscle
21	chr15:42116200-42119600	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:42116200-42119600	Weak transcription	Left Ventricle	heart
23	chr15:42116600-42119600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:42116800-42119600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:42117000-42119600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:42117000-42119600	Weak transcription	Osteobl	bone
27	chr15:42117000-42120200	Enhancers	Fetal Heart	heart
28	chr15:42117200-42119600	Weak transcription	Aorta	Aorta
29	chr15:42117200-42119600	Weak transcription	Brain Angular Gyrus	brain
30	chr15:42117200-42119600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:42117200-42119600	Weak transcription	Brain Substantia Nigra	brain
32	chr15:42117200-42119600	Weak transcription	NH-A	brain
33	chr15:42117400-42119600	Weak transcription	Liver	Liver
34	chr15:42117400-42119600	Weak transcription	HSMMtube	muscle
35	chr15:42117600-42119600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:42117800-42119600	Weak transcription	Ovary	ovary
37	chr15:42117800-42119600	Weak transcription	Right Ventricle	heart
38	chr15:42118000-42119600	Weak transcription	Brain Anterior Caudate	brain
39	chr15:42118200-42119600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:42118200-42119600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:42118200-42119600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:42118200-42119600	Weak transcription	Gastric	stomach
43	chr15:42118400-42119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:42118400-42119600	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:42118400-42119600	Weak transcription	Pancreas	Pancrea
46	chr15:42118400-42119600	Weak transcription	GM12878-XiMat	blood
47	chr15:42118400-42119600	Weak transcription	NHDF-Ad	bronchial
48	chr15:42118600-42119600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:42118600-42119600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:42118600-42119600	Weak transcription	NHLF	lung

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