Variant report

Variant	rs2286409
Chromosome Location	chr14:71794745-71794746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71791876..71795993-chr14:71799711..71802625,3	MCF-7	breast:
2	chr14:71786919..71789701-chr14:71792823..71795908,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction
ENSG00000259146	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12878989	0.92[YRI][hapmap]
rs12884929	0.80[AFR][1000 genomes]
rs12891975	0.81[AFR][1000 genomes]
rs17109220	1.00[ASN][1000 genomes]
rs17178192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17767398	0.92[ASW][hapmap];0.91[LWK][hapmap];0.93[YRI][hapmap]
rs35151594	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3742844	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4899394	0.93[YRI][hapmap]
rs61991213	0.81[AFR][1000 genomes]
rs7152842	0.93[YRI][hapmap]
rs74060335	0.85[ASN][1000 genomes]
rs74060336	0.85[ASN][1000 genomes]
rs74060338	0.85[ASN][1000 genomes]
rs9323558	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71788600-71811200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:71788600-71817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:71789000-71800600	Weak transcription	Esophagus	oesophagus
4	chr14:71789200-71796800	Weak transcription	Fetal Intestine Small	intestine
5	chr14:71789200-71800400	Weak transcription	Aorta	Aorta
6	chr14:71789400-71802200	Weak transcription	Fetal Intestine Large	intestine
7	chr14:71789800-71794800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:71789800-71797000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:71789800-71820000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:71790000-71795000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:71790000-71796000	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:71790200-71798000	Weak transcription	Brain Angular Gyrus	brain
13	chr14:71791800-71795600	Enhancers	Primary T cells from cord blood	blood
14	chr14:71791800-71806400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:71792000-71796200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:71792000-71801800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:71792200-71795400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:71792200-71800000	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:71792200-71819400	Weak transcription	NHEK	skin
20	chr14:71792400-71800000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:71792400-71811800	Weak transcription	Fetal Kidney	kidney
22	chr14:71792600-71798200	Weak transcription	Small Intestine	intestine
23	chr14:71792600-71798600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:71792600-71798800	Weak transcription	Thymus	Thymus
25	chr14:71792800-71794800	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:71792800-71794800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:71792800-71795400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr14:71792800-71795600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:71792800-71798200	Weak transcription	Adipose Nuclei	Adipose
30	chr14:71792800-71798200	Weak transcription	Brain Anterior Caudate	brain
31	chr14:71792800-71800000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:71792800-71800000	Weak transcription	Brain Substantia Nigra	brain
33	chr14:71792800-71803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:71792800-71806600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:71792800-71811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:71792800-71813000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:71792800-71820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:71792800-71820000	Weak transcription	Pancreas	Pancrea
39	chr14:71793000-71794800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:71793000-71795000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr14:71793000-71810400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:71793200-71795000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr14:71793400-71794800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr14:71793400-71795600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:71793400-71796000	Enhancers	Dnd41	blood
46	chr14:71793800-71795600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr14:71794000-71796000	Enhancers	Primary B cells from cord blood	blood
48	chr14:71794200-71794800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
49	chr14:71794200-71795000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr14:71794200-71795200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links