Variant report

Variant	rs3742844
Chromosome Location	chr14:71797107-71797108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71787090..71788740-chr14:71796543..71798453,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17109220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17178192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2286409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35151594	1.00[ASN][1000 genomes]
rs74060335	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74060336	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74060338	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9323558	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71788600-71811200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:71788600-71817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:71789000-71800600	Weak transcription	Esophagus	oesophagus
4	chr14:71789200-71800400	Weak transcription	Aorta	Aorta
5	chr14:71789400-71802200	Weak transcription	Fetal Intestine Large	intestine
6	chr14:71789800-71820000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:71790200-71798000	Weak transcription	Brain Angular Gyrus	brain
8	chr14:71791800-71806400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:71792000-71801800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:71792200-71800000	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:71792200-71819400	Weak transcription	NHEK	skin
12	chr14:71792400-71800000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:71792400-71811800	Weak transcription	Fetal Kidney	kidney
14	chr14:71792600-71798200	Weak transcription	Small Intestine	intestine
15	chr14:71792600-71798600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:71792600-71798800	Weak transcription	Thymus	Thymus
17	chr14:71792800-71798200	Weak transcription	Adipose Nuclei	Adipose
18	chr14:71792800-71798200	Weak transcription	Brain Anterior Caudate	brain
19	chr14:71792800-71800000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:71792800-71800000	Weak transcription	Brain Substantia Nigra	brain
21	chr14:71792800-71803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:71792800-71806600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:71792800-71811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:71792800-71813000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:71792800-71820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:71792800-71820000	Weak transcription	Pancreas	Pancrea
27	chr14:71793000-71810400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:71794800-71799400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr14:71794800-71799800	Weak transcription	Hela-S3	cervix
30	chr14:71794800-71816400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:71795000-71811400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr14:71795000-71821800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:71795200-71798200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr14:71795200-71798200	Weak transcription	Stomach Mucosa	stomach
35	chr14:71795200-71802000	Weak transcription	HepG2	liver
36	chr14:71795200-71804200	Weak transcription	HMEC	breast
37	chr14:71795200-71811400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr14:71795200-71812800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:71795200-71819600	Weak transcription	HSMM	muscle
40	chr14:71795200-71820000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:71795200-71821600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:71795400-71798200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:71795400-71798400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:71795400-71798800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr14:71795400-71799200	Weak transcription	Colon Smooth Muscle	Colon
46	chr14:71795400-71803000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:71795400-71804600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:71795400-71806200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr14:71795400-71806400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:71795400-71806400	Weak transcription	Osteobl	bone

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