Variant report

Variant	rs35151594
Chromosome Location	chr14:71808583-71808584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs12127	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12878989	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12879243	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12880291	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12880611	0.82[EUR][1000 genomes]
rs12881643	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12881957	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12884929	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12887261	0.90[EUR][1000 genomes]
rs12889866	0.82[EUR][1000 genomes]
rs12891975	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12894016	0.82[EUR][1000 genomes]
rs12894478	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12896900	0.81[EUR][1000 genomes]
rs12896986	0.82[EUR][1000 genomes]
rs14030	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17109220	1.00[ASN][1000 genomes]
rs17178045	0.82[EUR][1000 genomes]
rs17178206	0.82[EUR][1000 genomes]
rs17178234	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17178387	0.81[EUR][1000 genomes]
rs17767386	0.83[EUR][1000 genomes]
rs17767392	0.83[EUR][1000 genomes]
rs17767398	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17767410	0.84[EUR][1000 genomes]
rs17767446	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17767499	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17767523	0.82[EUR][1000 genomes]
rs17767553	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1990241	0.84[EUR][1000 genomes]
rs2108049	0.82[EUR][1000 genomes]
rs2108707	0.86[EUR][1000 genomes]
rs2109276	0.82[EUR][1000 genomes]
rs2286409	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2877729	0.82[EUR][1000 genomes]
rs33994051	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34011442	0.85[EUR][1000 genomes]
rs34057981	0.82[EUR][1000 genomes]
rs34061264	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34176710	0.81[EUR][1000 genomes]
rs34281405	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34281934	0.84[EUR][1000 genomes]
rs34320622	0.82[EUR][1000 genomes]
rs34347034	0.82[EUR][1000 genomes]
rs34388001	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34454371	0.82[EUR][1000 genomes]
rs34469007	0.82[EUR][1000 genomes]
rs34524083	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34528013	0.83[EUR][1000 genomes]
rs34528131	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34533948	0.86[EUR][1000 genomes]
rs34649709	0.85[EUR][1000 genomes]
rs34674149	0.84[EUR][1000 genomes]
rs34725136	0.86[EUR][1000 genomes]
rs34746156	0.85[EUR][1000 genomes]
rs34748537	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34767050	0.87[EUR][1000 genomes]
rs34873919	0.84[EUR][1000 genomes]
rs34911660	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34957192	0.81[EUR][1000 genomes]
rs34991781	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34993988	0.85[EUR][1000 genomes]
rs35051046	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35054229	0.89[EUR][1000 genomes]
rs35094946	0.85[EUR][1000 genomes]
rs35122644	0.85[EUR][1000 genomes]
rs35260692	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35468256	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35589413	0.80[EUR][1000 genomes]
rs35609708	0.81[EUR][1000 genomes]
rs35613269	0.82[EUR][1000 genomes]
rs35620527	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35621718	0.85[EUR][1000 genomes]
rs35625243	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35680546	0.81[EUR][1000 genomes]
rs35692397	0.82[EUR][1000 genomes]
rs35796129	0.86[EUR][1000 genomes]
rs35822724	0.87[EUR][1000 genomes]
rs35831373	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35854505	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35866366	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36052007	0.81[EUR][1000 genomes]
rs36057816	0.83[EUR][1000 genomes]
rs36093218	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3742844	1.00[ASN][1000 genomes]
rs4453405	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4899394	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56363446	0.83[EUR][1000 genomes]
rs56407721	0.85[EUR][1000 genomes]
rs61989367	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61989373	0.82[EUR][1000 genomes]
rs61989374	0.82[EUR][1000 genomes]
rs61989377	0.82[EUR][1000 genomes]
rs61989379	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61989382	0.81[EUR][1000 genomes]
rs61989386	0.81[EUR][1000 genomes]
rs61991199	0.85[EUR][1000 genomes]
rs61991200	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61991201	0.85[EUR][1000 genomes]
rs61991202	0.86[EUR][1000 genomes]
rs61991203	0.83[EUR][1000 genomes]
rs61991204	0.83[EUR][1000 genomes]
rs61991205	0.84[EUR][1000 genomes]
rs61991213	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61991243	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61991246	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61991247	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61991248	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61991249	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61991250	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61991255	0.82[EUR][1000 genomes]
rs66645707	0.81[EUR][1000 genomes]
rs67489015	0.85[EUR][1000 genomes]
rs68073803	0.86[EUR][1000 genomes]
rs7140354	0.83[EUR][1000 genomes]
rs7142180	0.83[EUR][1000 genomes]
rs7142214	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7145755	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7147434	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7147668	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7152842	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7156460	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs722633	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs723966	0.83[EUR][1000 genomes]
rs725673	0.82[EUR][1000 genomes]
rs72728427	0.87[EUR][1000 genomes]
rs74060335	0.85[ASN][1000 genomes]
rs74060336	0.85[ASN][1000 genomes]
rs74060338	0.85[ASN][1000 genomes]
rs8007068	0.87[EUR][1000 genomes]
rs8015644	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8019721	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71788600-71811200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:71788600-71817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:71789800-71820000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:71792200-71819400	Weak transcription	NHEK	skin
5	chr14:71792400-71811800	Weak transcription	Fetal Kidney	kidney
6	chr14:71792800-71811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:71792800-71813000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:71792800-71820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:71792800-71820000	Weak transcription	Pancreas	Pancrea
10	chr14:71793000-71810400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:71794800-71816400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:71795000-71811400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:71795000-71821800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:71795200-71811400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:71795200-71812800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:71795200-71819600	Weak transcription	HSMM	muscle
17	chr14:71795200-71820000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:71795200-71821600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:71795400-71813000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:71795800-71821400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:71797200-71821800	Weak transcription	HSMMtube	muscle
22	chr14:71797600-71821200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:71798800-71818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:71799400-71812800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:71800400-71819200	Weak transcription	Hela-S3	cervix
26	chr14:71800600-71816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr14:71800600-71822200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:71801400-71821000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:71803200-71810600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr14:71803400-71811800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:71805200-71818800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:71805200-71822200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:71805400-71808600	Strong transcription	GM12878-XiMat	blood
34	chr14:71805400-71809800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:71805400-71828600	Weak transcription	Dnd41	blood
36	chr14:71805800-71811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:71806000-71819400	Weak transcription	Primary T cells from cord blood	blood
38	chr14:71806200-71808600	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr14:71806200-71808600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr14:71806400-71808600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr14:71806400-71808800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr14:71806600-71838400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:71806800-71811400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:71806800-71817600	Weak transcription	Osteobl	bone
45	chr14:71807000-71808600	Enhancers	Liver	Liver
46	chr14:71807000-71809800	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:71807000-71809800	Weak transcription	Fetal Heart	heart
48	chr14:71807000-71821600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr14:71807200-71808600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr14:71807400-71809400	Enhancers	HepG2	liver

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