Variant report

Variant	rs12896900
Chromosome Location	chr14:71970625-71970626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71968287..71971252-chr14:71972751..71975568,2	K562	blood:
2	chr14:71788065..71790973-chr14:71970310..71972468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259146	Chromatin interaction
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:193)

rs_ID	r²[population]
rs10135680	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10138557	0.89[EUR][1000 genomes]
rs10139519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1029570	0.89[EUR][1000 genomes]
rs10483836	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10873246	0.86[AFR][1000 genomes]
rs11848785	0.83[EUR][1000 genomes]
rs12127	0.90[EUR][1000 genomes]
rs12433040	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12878989	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12879243	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12880188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880291	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880611	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12881643	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12881957	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12884929	0.83[EUR][1000 genomes]
rs12885344	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12887261	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12889866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12891975	0.85[EUR][1000 genomes]
rs12892512	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894016	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12894478	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12896986	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs14030	0.90[EUR][1000 genomes]
rs17178045	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17178206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17178234	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17178387	0.86[EUR][1000 genomes]
rs17767380	0.81[EUR][1000 genomes]
rs17767392	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767398	0.82[EUR][1000 genomes]
rs17767410	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767446	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767499	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767523	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767680	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17767686	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1859643	0.89[EUR][1000 genomes]
rs1981588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1990241	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2108049	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2108057	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs2108706	0.91[CEU][hapmap]
rs2108707	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2109276	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2190240	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2214836	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2286136	1.00[JPT][hapmap]
rs2332638	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2332640	0.89[EUR][1000 genomes]
rs2332641	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2877729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28859432	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33994051	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34011442	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34057981	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34061264	0.84[EUR][1000 genomes]
rs34169215	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34176710	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34281405	0.83[EUR][1000 genomes]
rs34281934	0.86[EUR][1000 genomes]
rs34320622	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34347034	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34388001	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34454371	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34469007	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34480562	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34524083	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34528013	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34528131	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34533948	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34649709	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34674149	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34725136	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34746156	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34748537	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34767050	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34873919	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34911660	0.80[EUR][1000 genomes]
rs34957192	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34991781	0.89[EUR][1000 genomes]
rs34993988	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35051046	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35054229	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35094946	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35122644	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35151594	0.81[EUR][1000 genomes]
rs35231795	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35260692	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35415083	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35468256	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35589413	0.85[EUR][1000 genomes]
rs35609708	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35613269	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35620527	0.90[EUR][1000 genomes]
rs35621718	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35625243	0.88[EUR][1000 genomes]
rs35680546	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35692397	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35760654	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35796129	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35822724	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35831373	0.89[EUR][1000 genomes]
rs35854505	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35866366	0.89[EUR][1000 genomes]
rs35971049	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36052007	0.86[EUR][1000 genomes]
rs36057816	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36072220	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36093218	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3784062	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3784064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3784066	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4140797	0.86[AFR][1000 genomes]
rs4453405	0.81[EUR][1000 genomes]
rs4899394	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4899398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4902938	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902941	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs55883127	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56180634	0.83[EUR][1000 genomes]
rs56363446	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56407721	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989367	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989373	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989374	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989377	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989379	0.90[EUR][1000 genomes]
rs61989382	0.86[EUR][1000 genomes]
rs61989383	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61989386	0.86[EUR][1000 genomes]
rs61989417	0.93[AFR][1000 genomes]
rs61991195	0.81[EUR][1000 genomes]
rs61991199	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991200	0.81[EUR][1000 genomes]
rs61991201	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991202	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991203	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991204	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991205	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991213	0.85[EUR][1000 genomes]
rs61991243	0.87[EUR][1000 genomes]
rs61991246	0.86[EUR][1000 genomes]
rs61991247	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991248	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991249	0.87[EUR][1000 genomes]
rs61991250	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991254	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61991255	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574015	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574016	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs66645707	0.86[EUR][1000 genomes]
rs67489015	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68073803	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7140354	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7140501	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7142180	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7142214	0.81[EUR][1000 genomes]
rs7142343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7144299	0.91[EUR][1000 genomes]
rs7144829	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7145755	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7147434	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147668	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7148679	0.86[AFR][1000 genomes]
rs7152674	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7152842	0.88[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs7154787	0.81[EUR][1000 genomes]
rs7154841	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7156313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7156460	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157241	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs722633	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723966	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs725673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72728427	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs757850	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8003478	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8006300	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs8007068	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8008605	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8010616	0.87[EUR][1000 genomes]
rs8013161	0.83[EUR][1000 genomes]
rs8014349	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8015644	0.86[EUR][1000 genomes]
rs8017775	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8019721	0.87[EUR][1000 genomes]
rs9323561	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9672060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71935400-71980400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:71946000-71995600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:71954400-71978200	Weak transcription	Primary T cells from cord blood	blood
4	chr14:71956000-71971200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:71956000-71979800	Weak transcription	Aorta	Aorta
6	chr14:71959400-71977600	Weak transcription	Fetal Brain Male	brain
7	chr14:71963000-71979600	Weak transcription	Primary B cells from cord blood	blood
8	chr14:71964800-71979600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:71964800-71979600	Weak transcription	Hela-S3	cervix
10	chr14:71965000-71979600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:71965000-71979600	Weak transcription	HSMMtube	muscle
12	chr14:71965200-71988000	Weak transcription	HSMM	muscle
13	chr14:71965400-71978600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:71965400-71981600	Weak transcription	Brain Angular Gyrus	brain
15	chr14:71965600-71979600	Weak transcription	Osteobl	bone
16	chr14:71966200-71979600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:71966200-71981800	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:71966200-71996400	Weak transcription	NHEK	skin
19	chr14:71967400-71977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:71967800-71979800	Weak transcription	Spleen	Spleen
21	chr14:71969200-71971600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:71969200-71972000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:71969200-71979600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:71970000-71979600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:71970400-71980000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:71970600-71970800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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