Variant report

Variant	rs61991254
Chromosome Location	chr14:71886375-71886376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71877515..71880070-chr14:71885947..71887689,2	MCF-7	breast:
2	chr14:71786410..71788050-chr14:71885965..71888835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10135680	0.85[EUR][1000 genomes]
rs10138557	0.83[EUR][1000 genomes]
rs1029570	0.83[EUR][1000 genomes]
rs10483836	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12127	0.87[EUR][1000 genomes]
rs12433040	0.86[EUR][1000 genomes]
rs12878989	0.83[EUR][1000 genomes]
rs12879243	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880188	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880291	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880611	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12881643	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12881957	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12884929	0.81[EUR][1000 genomes]
rs12885344	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12887261	0.87[EUR][1000 genomes]
rs12889866	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12891975	0.82[EUR][1000 genomes]
rs12892512	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12894016	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12894478	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12896900	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12896986	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs14030	0.87[EUR][1000 genomes]
rs17178045	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17178206	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17178234	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17178387	0.80[EUR][1000 genomes]
rs17767380	0.85[AFR][1000 genomes]
rs17767392	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17767410	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17767446	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767499	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767523	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767553	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17767680	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17767686	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1859643	0.83[EUR][1000 genomes]
rs1981588	0.86[EUR][1000 genomes]
rs1990241	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2108049	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2108707	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2109276	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2190240	0.83[EUR][1000 genomes]
rs2214836	0.86[EUR][1000 genomes]
rs2332638	0.86[EUR][1000 genomes]
rs2332640	0.83[EUR][1000 genomes]
rs2332641	0.85[EUR][1000 genomes]
rs2877729	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28859432	0.82[EUR][1000 genomes]
rs33994051	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34011442	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34057981	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34061264	0.82[EUR][1000 genomes]
rs34169215	0.89[EUR][1000 genomes]
rs34176710	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34281405	0.81[EUR][1000 genomes]
rs34281934	0.80[EUR][1000 genomes]
rs34320622	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34347034	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34388001	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34454371	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34469007	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34480562	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34524083	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34528013	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34528131	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34533948	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34649709	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34674149	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34725136	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34746156	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34748537	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34767050	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34873919	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34957192	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34991781	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34993988	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35051046	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35054229	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35094946	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35122644	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35231795	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35260692	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35415083	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35468256	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35609708	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35613269	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35620527	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35621718	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35625243	0.86[EUR][1000 genomes]
rs35680546	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35692397	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35760654	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35796129	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35822724	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35831373	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35854505	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35866366	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35971049	0.86[EUR][1000 genomes]
rs36052007	0.80[EUR][1000 genomes]
rs36057816	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36072220	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36093218	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3784062	0.85[EUR][1000 genomes]
rs3784064	0.86[EUR][1000 genomes]
rs3784066	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3825719	0.86[EUR][1000 genomes]
rs4899398	0.85[EUR][1000 genomes]
rs4902938	0.89[EUR][1000 genomes]
rs4902941	0.84[EUR][1000 genomes]
rs55883127	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56363446	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56407721	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989367	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989373	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989374	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989377	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989379	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61989382	0.80[EUR][1000 genomes]
rs61989383	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61989386	0.80[EUR][1000 genomes]
rs61991195	0.85[AFR][1000 genomes]
rs61991199	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991201	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991202	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991203	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991204	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991205	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61991213	0.83[EUR][1000 genomes]
rs61991243	0.84[EUR][1000 genomes]
rs61991246	0.83[EUR][1000 genomes]
rs61991247	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991248	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991249	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61991250	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61991255	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574015	0.84[EUR][1000 genomes]
rs6574016	0.86[EUR][1000 genomes]
rs66645707	0.80[EUR][1000 genomes]
rs67489015	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68073803	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7140354	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7140501	0.83[EUR][1000 genomes]
rs7142180	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7142343	0.86[EUR][1000 genomes]
rs7144299	0.86[EUR][1000 genomes]
rs7144829	0.86[EUR][1000 genomes]
rs7145755	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7147434	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147668	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7152674	0.86[EUR][1000 genomes]
rs7152842	0.84[EUR][1000 genomes]
rs7154841	0.86[EUR][1000 genomes]
rs7156313	0.86[EUR][1000 genomes]
rs7156460	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7157241	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs722633	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs723966	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs725673	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72728427	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs757850	0.86[EUR][1000 genomes]
rs8007068	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8008605	0.86[EUR][1000 genomes]
rs8010616	0.82[EUR][1000 genomes]
rs8014349	0.86[EUR][1000 genomes]
rs8015644	0.83[EUR][1000 genomes]
rs8017775	0.83[EUR][1000 genomes]
rs8019721	0.84[EUR][1000 genomes]
rs9323561	0.86[EUR][1000 genomes]
rs9672060	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71866000-71889000	Weak transcription	Dnd41	blood
2	chr14:71867200-71892200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:71868200-71891400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:71869600-71904200	Weak transcription	Hela-S3	cervix
5	chr14:71870600-71891000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr14:71871600-71899600	Weak transcription	Primary B cells from cord blood	blood
7	chr14:71874400-71897000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:71875800-71889400	Weak transcription	Fetal Kidney	kidney
9	chr14:71875800-71897400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:71876000-71891000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:71876200-71889000	Weak transcription	HSMM	muscle
12	chr14:71876200-71890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:71876200-71896800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:71877000-71888400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:71877800-71888800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr14:71878200-71891000	Weak transcription	Liver	Liver
17	chr14:71878400-71891400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:71878600-71888600	Weak transcription	Primary T cells from cord blood	blood
19	chr14:71878600-71897200	Weak transcription	Thymus	Thymus
20	chr14:71878600-71905200	Weak transcription	Aorta	Aorta
21	chr14:71879200-71887200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:71881200-71899000	Weak transcription	Fetal Intestine Small	intestine
23	chr14:71882000-71888400	Weak transcription	Fetal Stomach	stomach
24	chr14:71882200-71888400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:71882400-71904400	Weak transcription	NH-A	brain
26	chr14:71882800-71887400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:71882800-71891200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr14:71883000-71886400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:71883200-71887000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:71883400-71891000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:71883600-71888600	Weak transcription	Osteobl	bone
32	chr14:71883800-71890200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:71883800-71890800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:71883800-71892200	Weak transcription	HMEC	breast
35	chr14:71883800-71905800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:71884000-71889000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:71884000-71889200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:71884000-71890000	Weak transcription	NHEK	skin
39	chr14:71884000-71897200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:71884200-71888400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr14:71884400-71887600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:71884800-71886600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr14:71885200-71887000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr14:71885600-71889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:71885800-71886600	Weak transcription	Ovary	ovary
46	chr14:71885800-71888800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:71885800-71890200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr14:71885800-71890800	Weak transcription	NHDF-Ad	bronchial
49	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
50	chr14:71886000-71888200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links